PKreport: A reporting pipeline for checking population pharmacokinetic model assumption

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PKreport aims to 1) provide automatic pipeline for users to visualize data and models. It creates a flexible R framework with automatically generated R scripts to save time and cost for later usage; 2) implement an archive-oriented management tool for users to store, retrieve and modify figures. 3) offer powerful and convenient service to generate high-quality graphs based on two R packages: lattice and ggplot2.

Author
Xiaoyong Sun
Date of publication
2014-03-19 00:18:16
Maintainer
Xiaoyong Sun <johnsunx1@gmail.com>
License
GPL (>= 2)
Version
1.5

View on CRAN

Man pages

non.coi-methods
Output coi file
non.cor-methods
Output cor file
non.cov-methods
Output cov file
non.lst.meth-methods
output method in lst file
non.lst-methods
Output lst content
non.lst.objs-methods
Output objective function standard deviation in lst file
non.lst.objt-methods
Output objective function in lst file
non.lst.objv-methods
Output objective function value in lst file
non.lst.term-methods
output analysis section in lst file
nonmem-class
Class nonmem: contain and describe all nonmem output
non.phi-methods
Output phi file
non.select-methods
Output selected lines in lst files
non.tab-methods
Output tab content in tab file
pdata
A sample data
PKadjust
Update figures
PKclean
Clean related archives
PKcode
Generate R scripts
PKconfig
Data configuration
PKdata
Data input
PKfigure
Diagnose model and generate figures
PKnum
Output numerical value
PKoutput
Output all results to folders and files
PKreport.1
Exploratory data analysis
PKreport.2
Individual plots
PKreport.3
Goodness-of-fit plots
PKreport.4
Structural model diagnostics
PKreport.5
Residual model diagnostics
PKreport.6
Parameters diagnostics
PKreport.7
Covariate model diagnostics
PKreport.8
Random effects diagnostics
PKreport-package
An automatically pipeline for population pharmacokinetic...
PKshow
Display results

Files in this package

PKreport
PKreport/inst
PKreport/inst/CITATION
PKreport/inst/monolix
PKreport/inst/monolix/indiv_parameters.txt
PKreport/inst/monolix/predictions.txt
PKreport/inst/monolix/indiv_eta.txt
PKreport/inst/doc
PKreport/inst/doc/PKreport.rnw
PKreport/inst/doc/PKreport.pdf
PKreport/NAMESPACE
PKreport/data
PKreport/data/pdata.rda
PKreport/R
PKreport/R/PKdata.R
PKreport/R/PKclean.R
PKreport/R/PKadjust.R
PKreport/R/PKoutput.R
PKreport/R/PKfigure.R
PKreport/R/PKshow.R
PKreport/R/global.R
PKreport/R/class.R
PKreport/vignettes
PKreport/vignettes/c2_s2_2web.pdf
PKreport/vignettes/pkreport2.jpg
PKreport/vignettes/c2_s2_3dir.pdf
PKreport/vignettes/PKreport.rnw
PKreport/vignettes/PKreport.css
PKreport/vignettes/PKreport.tex
PKreport/vignettes/c2_s2_5code.pdf
PKreport/vignettes/c2_s2_4dir.pdf
PKreport/vignettes/c2_s1_1.pdf
PKreport/vignettes/c2_s2_3fig.pdf
PKreport/MD5
PKreport/build
PKreport/build/vignette.rds
PKreport/DESCRIPTION
PKreport/man
PKreport/man/PKreport.8.Rd
PKreport/man/PKconfig.Rd
PKreport/man/PKreport-package.Rd
PKreport/man/non.lst.objt-methods.Rd
PKreport/man/non.tab-methods.Rd
PKreport/man/PKreport.1.Rd
PKreport/man/non.lst.objv-methods.Rd
PKreport/man/PKadjust.Rd
PKreport/man/PKfigure.Rd
PKreport/man/non.lst.term-methods.Rd
PKreport/man/PKreport.2.Rd
PKreport/man/PKreport.5.Rd
PKreport/man/PKshow.Rd
PKreport/man/PKreport.6.Rd
PKreport/man/nonmem-class.Rd
PKreport/man/non.phi-methods.Rd
PKreport/man/PKnum.Rd
PKreport/man/pdata.Rd
PKreport/man/non.cov-methods.Rd
PKreport/man/PKdata.Rd
PKreport/man/PKreport.4.Rd
PKreport/man/PKreport.7.Rd
PKreport/man/PKclean.Rd
PKreport/man/PKreport.3.Rd
PKreport/man/non.lst.meth-methods.Rd
PKreport/man/non.select-methods.Rd
PKreport/man/non.cor-methods.Rd
PKreport/man/PKcode.Rd
PKreport/man/PKoutput.Rd
PKreport/man/non.lst.objs-methods.Rd
PKreport/man/non.coi-methods.Rd
PKreport/man/non.lst-methods.Rd