PKreport: A reporting pipeline for checking population pharmacokinetic model assumption
Version 1.5

PKreport aims to 1) provide automatic pipeline for users to visualize data and models. It creates a flexible R framework with automatically generated R scripts to save time and cost for later usage; 2) implement an archive-oriented management tool for users to store, retrieve and modify figures. 3) offer powerful and convenient service to generate high-quality graphs based on two R packages: lattice and ggplot2.

AuthorXiaoyong Sun
Date of publication2014-03-19 00:18:16
MaintainerXiaoyong Sun <johnsunx1@gmail.com>
LicenseGPL (>= 2)
Version1.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PKreport")

Getting started

Package overview

Popular man pages

non.coi-methods: Output coi file
non.lst.objt-methods: Output objective function in lst file
non.lst.objv-methods: Output objective function value in lst file
nonmem-class: Class nonmem: contain and describe all nonmem output
non.tab-methods: Output tab content in tab file
PKcode: Generate R scripts
PKreport.3: Goodness-of-fit plots
See all...

All man pages Function index File listing

Man pages

non.coi-methods: Output coi file
non.cor-methods: Output cor file
non.cov-methods: Output cov file
non.lst.meth-methods: output method in lst file
non.lst-methods: Output lst content
non.lst.objs-methods: Output objective function standard deviation in lst file
non.lst.objt-methods: Output objective function in lst file
non.lst.objv-methods: Output objective function value in lst file
non.lst.term-methods: output analysis section in lst file
nonmem-class: Class nonmem: contain and describe all nonmem output
non.phi-methods: Output phi file
non.select-methods: Output selected lines in lst files
non.tab-methods: Output tab content in tab file
pdata: A sample data
PKadjust: Update figures
PKclean: Clean related archives
PKcode: Generate R scripts
PKconfig: Data configuration
PKdata: Data input
PKfigure: Diagnose model and generate figures
PKnum: Output numerical value
PKoutput: Output all results to folders and files
PKreport.1: Exploratory data analysis
PKreport.2: Individual plots
PKreport.3: Goodness-of-fit plots
PKreport.4: Structural model diagnostics
PKreport.5: Residual model diagnostics
PKreport.6: Parameters diagnostics
PKreport.7: Covariate model diagnostics
PKreport.8: Random effects diagnostics
PKreport-package: An automatically pipeline for population pharmacokinetic...
PKshow: Display results

Functions

PKadjust Man page Source code
PKclean Man page Source code
PKcode Man page Source code
PKconfig Man page Source code
PKdata Man page Source code
PKfigure Man page Source code
PKnum Man page Source code
PKoutput Man page Source code
PKreport Man page
PKreport-package Man page
PKreport.1 Man page Source code
PKreport.2 Man page Source code
PKreport.3 Man page Source code
PKreport.4 Man page Source code
PKreport.5 Man page Source code
PKreport.6 Man page Source code
PKreport.7 Man page Source code
PKreport.8 Man page Source code
PKshow Man page Source code
addCodeNote Source code
addFigName Source code
addList1 Source code
addList1.old Source code
addList2 Source code
generate.plot Source code
initialize,nonmem-method Man page
match.index Source code
non.coi Man page
non.coi, nonmem-method Man page
non.coi,nonmem-method Man page
non.coi-methods Man page
non.cor Man page
non.cor, nonmem-method Man page
non.cor,nonmem-method Man page
non.cor-methods Man page
non.cov Man page
non.cov, nonmem-method Man page
non.cov,nonmem-method Man page
non.cov-methods Man page
non.lst Man page
non.lst, nonmem-method Man page
non.lst,nonmem-method Man page
non.lst-methods Man page
non.lst.meth Man page
non.lst.meth, nonmem-method Man page
non.lst.meth,nonmem-method Man page
non.lst.meth-methods Man page
non.lst.objs Man page
non.lst.objs, nonmem-method Man page
non.lst.objs,nonmem-method Man page
non.lst.objs-methods Man page
non.lst.objt Man page
non.lst.objt, nonmem-method Man page
non.lst.objt,nonmem-method Man page
non.lst.objt-methods Man page
non.lst.objv Man page
non.lst.objv, nonmem-method Man page
non.lst.objv,nonmem-method Man page
non.lst.objv-methods Man page
non.lst.term Man page
non.lst.term,nonmem-method Man page
non.lst.term-methods Man page
non.phi Man page
non.phi, nonmem-method Man page
non.phi,nonmem-method Man page
non.phi-methods Man page
non.select Man page
non.select, nonmem-method Man page
non.select,nonmem-method Man page
non.select-methods Man page
non.tab Man page
non.tab, nonmem-method Man page
non.tab,nonmem-method Man page
non.tab-methods Man page
non.term, nonmem-method Man page
nonmem-class Man page
pdata Man page
twoTermEqualLen Source code
writeHTML Source code
writeLst Source code
writeLst.tab Source code
writeTable Source code

Files

inst
inst/CITATION
inst/monolix
inst/monolix/indiv_parameters.txt
inst/monolix/predictions.txt
inst/monolix/indiv_eta.txt
inst/doc
inst/doc/PKreport.rnw
inst/doc/PKreport.pdf
NAMESPACE
data
data/pdata.rda
R
R/PKdata.R
R/PKclean.R
R/PKadjust.R
R/PKoutput.R
R/PKfigure.R
R/PKshow.R
R/global.R
R/class.R
vignettes
vignettes/c2_s2_2web.pdf
vignettes/pkreport2.jpg
vignettes/c2_s2_3dir.pdf
vignettes/PKreport.rnw
vignettes/PKreport.css
vignettes/PKreport.tex
vignettes/c2_s2_5code.pdf
vignettes/c2_s2_4dir.pdf
vignettes/c2_s1_1.pdf
vignettes/c2_s2_3fig.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/PKreport.8.Rd
man/PKconfig.Rd
man/PKreport-package.Rd
man/non.lst.objt-methods.Rd
man/non.tab-methods.Rd
man/PKreport.1.Rd
man/non.lst.objv-methods.Rd
man/PKadjust.Rd
man/PKfigure.Rd
man/non.lst.term-methods.Rd
man/PKreport.2.Rd
man/PKreport.5.Rd
man/PKshow.Rd
man/PKreport.6.Rd
man/nonmem-class.Rd
man/non.phi-methods.Rd
man/PKnum.Rd
man/pdata.Rd
man/non.cov-methods.Rd
man/PKdata.Rd
man/PKreport.4.Rd
man/PKreport.7.Rd
man/PKclean.Rd
man/PKreport.3.Rd
man/non.lst.meth-methods.Rd
man/non.select-methods.Rd
man/non.cor-methods.Rd
man/PKcode.Rd
man/PKoutput.Rd
man/non.lst.objs-methods.Rd
man/non.coi-methods.Rd
man/non.lst-methods.Rd
PKreport documentation built on May 19, 2017, 11:38 p.m.

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