Sample GWAS Dataset with 400 SNPs from Chromosome 1 and 6 (200 SNPs each).
A data frame with 400 observations on the following 6 variables.
1 d.f. Chi Square test Statistic
P value of 1 d.f. Chi Square test Statistic
The required values (Odds ratio and P value) can be calculated by using PLINK
Supplementary Material of Multiple Testing in Genome-Wide Association Studies via Hidden Markov Models, Bioinformatics, 2009