GWAS.SampleData | R Documentation |
Sample GWAS Dataset with 400 SNPs from Chromosome 1 and 6 (200 SNPs each).
data(GWAS.SampleData)
A data frame with 400 observations on the following 6 variables.
CHR
Chromosome ID
SNP
rs Id
BP
Phisical Position
OR
Odds Ratio
CHISQ
1 d.f. Chi Square test Statistic
P
P value of 1 d.f. Chi Square test Statistic
The required values (Odds ratio and P value) can be calculated by using PLINK
Supplementary Material of Multiple Testing in Genome-Wide Association Studies via Hidden Markov Models, Bioinformatics, 2009
data(GWAS.SampleData)
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