Description Usage Format Details References Examples

Sample GWAS Dataset with 400 SNPs from Chromosome 1 and 6 (200 SNPs each).

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A data frame with 400 observations on the following 6 variables.

`CHR`

Chromosome ID

`SNP`

rs Id

`BP`

Phisical Position

`OR`

Odds Ratio

`CHISQ`

1 d.f. Chi Square test Statistic

`P`

P value of 1 d.f. Chi Square test Statistic

The required values (Odds ratio and P value) can be calculated by using PLINK

Supplementary Material of Multiple Testing in Genome-Wide Association Studies via Hidden Markov Models, Bioinformatics, 2009

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