GWAS.SampleData: Sample GWAS Dataset

In PLIS: Multiplicity Control using Pooled LIS Statistic

Sample GWAS Dataset

Description

Sample GWAS Dataset with 400 SNPs from Chromosome 1 and 6 (200 SNPs each).

Usage

data(GWAS.SampleData)

Format

A data frame with 400 observations on the following 6 variables.

CHR

Chromosome ID

SNP

rs Id

BP

Phisical Position

OR

Odds Ratio

CHISQ

1 d.f. Chi Square test Statistic

P

P value of 1 d.f. Chi Square test Statistic

Details

The required values (Odds ratio and P value) can be calculated by using PLINK

References

Supplementary Material of Multiple Testing in Genome-Wide Association Studies via Hidden Markov Models, Bioinformatics, 2009

Examples

data(GWAS.SampleData)

PLIS documentation built on Oct. 2, 2022, 5:06 p.m.