R/data.R

In PMAPscore: Identify Prognosis-Related Pathways Altered by Somatic Mutation

#' @title roc_data, the data frame use for ploting ROC curve
#' @description The roc_data is used to generate ROC curves.
#' @usage roc_data
"roc_data"

#' @title final_signature, the final prognosis-related pathways
#' @description The final prognosis-related pathways identified by our approach.
#' @usage final_signature
"final_signature"

#' @title gene_symbol_Entrez, the genes' symbol and ENTREZID
#' @description The genes' symbol and ENTREZID.
#' @usage gene_symbol_Entrez
"gene_symbol_Entrez"

#' @title gene_Ucox_res, the univariate Cox regression result of candidate genes.
#' @description The univariate Cox regression result of candidate genes.
#' @usage gene_Ucox_res
"gene_Ucox_res"

#' @title km_data
#' @description The data use for drawing K-M survival curve.
#' @usage km_data
"km_data"

#' @title maf_data
#' @description The mutation data of patients.
#' @usage maf_data
"maf_data"

#' @title maffile
#' @description The mutation data of patients.
#' @usage maffile
"maffile"

#' @title mut_num
#' @description mut_num
#' @usage mut_num
"mut_num"

#' @title mut_sample
#' @description mut_sample.
#' @usage mut_sample
"mut_sample"

#' @title mut_status
#' @description mut_status.
#' @usage mut_status
"mut_status"

#' @title path_cox_data
#' @description path_cox_data
#' @usage path_cox_data
"path_cox_data"

#' @title path_Ucox_mul_res
#' @description path_Ucox_mul_res
#' @usage path_Ucox_mul_res
"path_Ucox_mul_res"

#' @title pfs_score
#' @description pfs_score.
#' @usage pfs_score
"pfs_score"

#' @title response
#' @description response.
#' @usage response
"response"

#' @title sur
#' @description sur
#' @usage sur
"sur"

#' @title path_gene
#' @description path_gene
#' @usage path_gene
"path_gene"

#' @title gene_Ucox
#' @description gene_Ucox
#' @usage gene_Ucox
"gene_Ucox"

#' @title symbol_Entrez
#' @description symbol_Entrez
#' @usage symbol_Entrez
"symbol_Entrez"

#' @title path_Ucox_mul
#' @description path_Ucox_mul
#' @usage path_Ucox_mul
"path_Ucox_mul"

#' @title sig
#' @description sig
#' @usage sig
"sig"

#' @title mut_sam
#' @description mut_sam.
#' @usage mut_sam
"mut_sam"