example.data: Example datasets

In PO.EN: An Elastic-Net Regularized Presence-Only Model

Description

This data list, example.data, includes three datasets generated based on Saturation mutagenesis results (M. Kircher, et al.,2019) and the DeepSEA features (Zhou & Troyanskaya, 2015). The training and testing datasets in the data list include binary response vectors, which are truncations of the P values of tissue K562 from the Saturation mutagenesis results, and reduced versions of the DeepSEA features for a faster computational demonstration.

Usage

data(example.data)

Format

The example.data$train.data and example.data$test.data are dataframes with 220 and 100 observations and 146 variables.

response

A binary response vector

features

Standardized 145 DeepSEA features

PO.EN documentation built on Aug. 19, 2020, 9:06 a.m.