prismaDuplicatePCA: Matrix Factorization Based on Replicate-Aware PCA

In PRISMA: Protocol Inspection and State Machine Analysis

Description

Efficient implementation of a replicate-aware principal component anaylsis (PCA).

Usage

prismaDuplicatePCA(prismaData)

Arguments

prismaData

PRISMA data for which a PCA should be calculated

Value

prismaPCA

Matrix factorization object $A = B C$, in which the factors are calculate by a replicate-aware PCA

Author(s)

Tammo Krueger <[e-mail]>

Examples

# please see the vingette for examles

Example output

Loading required package: Matrix
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: ggplot2

PRISMA documentation built on May 1, 2019, 10:15 p.m.