generics_mf: Generics For PRISMA Objects

In PRISMA: Protocol Inspection and State Machine Analysis

Description

Print and plot generic for the PRISMA matrix factorization objects.

Usage

## S3 method for class 'prismaMF'
plot(x, nLines = NULL, baseIndex = NULL, sampleIndex = NULL,
minValue = NULL, noRowClustering = FALSE, noColClustering = FALSE, type
= c("base", "coordinates"), ...)

Arguments

x	PRISMA matrix factorization object
nLines	number of lines that should be plotted
baseIndex	which bases should be plotted
sampleIndex	which samples should be plotted
minValue	cut-off value, i.e., every value smaller than minValue won't be shown
noRowClustering	don't cluster the rows
noColClustering	don't cluster the columns
type	show the base (type = "base", i.e. the B matrix) or show the coordinate (type = "coordinates", i.e. the C matrix).
...	not used

Author(s)

Tammo Krueger <[e-mail]>

See Also

estimateDimension, prismaHclust, prismaDuplicatePCA, prismaNMF

Examples

# please see the vingette for examles

Example output

Loading required package: Matrix
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: ggplot2

PRISMA documentation built on May 1, 2019, 10:15 p.m.