generics_mf: Generics For PRISMA Objects

Description Usage Arguments Author(s) See Also Examples

Description

Print and plot generic for the PRISMA matrix factorization objects.

Usage

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## S3 method for class 'prismaMF'
plot(x, nLines = NULL, baseIndex = NULL, sampleIndex = NULL,
minValue = NULL, noRowClustering = FALSE, noColClustering = FALSE, type
= c("base", "coordinates"), ...)

Arguments

x

PRISMA matrix factorization object

nLines

number of lines that should be plotted

baseIndex

which bases should be plotted

sampleIndex

which samples should be plotted

minValue

cut-off value, i.e., every value smaller than minValue won't be shown

noRowClustering

don't cluster the rows

noColClustering

don't cluster the columns

type

show the base (type = "base", i.e. the B matrix) or show the coordinate (type = "coordinates", i.e. the C matrix).

...

not used

Author(s)

Tammo Krueger <tammokrueger@googlemail.com>

See Also

estimateDimension, prismaHclust, prismaDuplicatePCA, prismaNMF

Examples

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# please see the vingette for examles

Example output

Loading required package: Matrix
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: ggplot2

PRISMA documentation built on May 1, 2019, 10:15 p.m.