initializeData: initialize environment envData

In PROFANCY: The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways

Description

initialize environment envData.

Usage

  initializeData()

Details

The environment variable envData save many information. We can use the function ls to see the variable and use ls(envData) to see information in it, which include DiseaseInfList, EHMNAddPathInfNetwork, KEGGAddPathInfNetwork, MetaboliteInf, ProstateCandidates, ProstateSeeds etc. We can use the function get to obtain one of them.

Author(s)

Qianlan Yao <[e-mail]> Desi Shang <[e-mail]> Chunquan Li <[e-mail]>

Examples

  
  initializeData()
  
  ##see information in environment variable envData
  ls(envData)
  
  ##obtain one variable in environment variable envData
  KEGGAddPathInfNetwork<-get("KEGGAddPathInfNetwork",envir=envData)

PROFANCY documentation built on May 29, 2017, 12:37 p.m.