simul.replace.similar: Simulation phase for P-SIMEX on inbreeding depression with...
In PSIMEX: SIMEX Algorithm on Pedigree Structures

Description Usage Arguments Value Author(s)

The function generates increasing amount of errors to the pedigree structure and calculates inbreeding depression for each simulation. For each level of the error proportion, a number of simulation equal to B are repeated. Errors are generated by replacing fathers with the most similar individual from the same generation.

1	simul.replace.similar(pedigree, lambda, B, data, model)

`pedigree`	A dataset containing the initial pedigree structure. It must have three columns: id, parent1, parent2.
`lambda`	A vector of real numbers specifying the error proportion to be generated.
`B`	An integer specifying the number of simulations to be run for each error level.
`data`	A dataset containing the phenotypic measurements on the population and the covariates which are included in the model. The trait shoul be named differently than 'trait' (see MCMCglmm)
`model`	A object of class model used to calculate heritability.

A list:

`inb`	A dataset containing all the simulated values for inbreeding depression
`se_inb`	A dataset containing all the simulated standard errors for inbreeding depression
`pval`	A dataset containing all the simulated p-values for inbreeding depression
`mean_inb`	A dataset containing all the simulated values for inbreeding coefficient mean
`median_inb`	A dataset containing all the simulated values for inbreeding coefficient median
`var_inb`	A dataset containing all the simulated values for inbreeding coefficient variance