PedCNV: An implementation for association analysis with CNV data.

An implementation for association analysis with CNV data in R. It provides two methods for association study: first, the observed probe intensity measurement can be directly used to detect the association of CNV with phenotypes of interest. Second, the most probable copy number is estimated with the proposed likelihood and the association of the most probable copy number with phenotype is tested. This method can be applied to both the independent and correlated population.

AuthorMeiling Liu, Sungho Won and Weicheng Zhu
Date of publication2014-01-02 19:18:18
MaintainerMeiling Liu <meiling.sta@gmail.com>
LicenseMIT + file LICENSE
Version0.1
https://github.com/rksyouyou/PedCNV

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Files in this package

PedCNV
PedCNV/src
PedCNV/src/Makevars
PedCNV/src/algorithm.cpp
PedCNV/src/Makevars.win
PedCNV/src/silWidth.cpp
PedCNV/src/getInitial.cpp
PedCNV/NAMESPACE
PedCNV/data
PedCNV/data/signal.RData
PedCNV/data/fam.RData
PedCNV/data/phi.RData
PedCNV/data/envirX.RData
PedCNV/R
PedCNV/R/silWidth.R PedCNV/R/docs.R PedCNV/R/AssoTestProcCS_mix.R PedCNV/R/ClusProc.R PedCNV/R/score_test.R PedCNV/R/cnvlmm_plot.R PedCNV/R/AI_EM_mixed.R
PedCNV/MD5
PedCNV/DESCRIPTION
PedCNV/man
PedCNV/man/print.clust.Rd PedCNV/man/envirX.Rd PedCNV/man/STE.Rd PedCNV/man/PedCNV-package.Rd PedCNV/man/AssoTestProc.Rd PedCNV/man/fam.Rd PedCNV/man/STIM.Rd PedCNV/man/phi.Rd PedCNV/man/print.asso.Rd PedCNV/man/signal.Rd PedCNV/man/plot.clust.Rd PedCNV/man/ClusProc.Rd
PedCNV/LICENSE

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