PedCNV-package: CNV association implementation
In PedCNV: An implementation for association analysis with CNV data.

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A package to perform robust quantitative traits association testing of copy number variants. It provides two methods for association study: first, the observed probe intensity measurement can be directly used to detect the association of CNV with phenotype of interest. Second, the most probable copy number is estimated with the proposed likelihood and the association of the most probable copy number with phenotype is tested. Also, it can be used to determine the optimal clustering number and clustering assignment for each individuals. This method can be applied to both the independent and correlated population.