PepPrep: Insilico peptide mutation, digestion and homologous comparison.

Amino acid exchange based on single nucleotide variant (SNV) information and tryptic digestion on peptide sequence. Searching for homologous by comparison of tryptic digested peptide sequences.

Install the latest version of this package by entering the following in R:
install.packages("PepPrep")
AuthorRafael Dellen
Date of publication2014-09-12 10:12:09
MaintainerRafael Dellen <Rafael.Dellen@uni-duesseldorf.de>
LicenseGPL-3
Version1.1.0

View on CRAN

Files

inst
inst/extdata
inst/extdata/ExampleData.RData
inst/extdata/myTest_snvToPep.fasta
inst/extdata/ExampleHomo_sapiens.GRCh37.70.pep.all.fa
inst/extdata/ExampleHumanProt.fasta
inst/extdata/ExampleMouseProt.fasta
NAMESPACE
R
R/CompHomPep_functions.R R/SNVtoPep_functions.R
MD5
DESCRIPTION
ChangeLog
man
man/compHomToPepFasta.Rd man/snvToPepFasta.Rd man/ExampleDataSets.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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