PepPrep: Insilico peptide mutation, digestion and homologous comparison.

Amino acid exchange based on single nucleotide variant (SNV) information and tryptic digestion on peptide sequence. Searching for homologous by comparison of tryptic digested peptide sequences.

AuthorRafael Dellen
Date of publication2014-09-12 10:12:09
MaintainerRafael Dellen <Rafael.Dellen@uni-duesseldorf.de>
LicenseGPL-3
Version1.1.0

View on CRAN

Files

PepPrep
PepPrep/inst
PepPrep/inst/extdata
PepPrep/inst/extdata/ExampleData.RData
PepPrep/inst/extdata/myTest_snvToPep.fasta
PepPrep/inst/extdata/ExampleHomo_sapiens.GRCh37.70.pep.all.fa
PepPrep/inst/extdata/ExampleHumanProt.fasta
PepPrep/inst/extdata/ExampleMouseProt.fasta
PepPrep/NAMESPACE
PepPrep/R
PepPrep/R/CompHomPep_functions.R PepPrep/R/SNVtoPep_functions.R
PepPrep/MD5
PepPrep/DESCRIPTION
PepPrep/ChangeLog
PepPrep/man
PepPrep/man/compHomToPepFasta.Rd PepPrep/man/snvToPepFasta.Rd PepPrep/man/ExampleDataSets.Rd

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