PepPrep: Insilico peptide mutation, digestion and homologous comparison.

Amino acid exchange based on single nucleotide variant (SNV) information and tryptic digestion on peptide sequence. Searching for homologous by comparison of tryptic digested peptide sequences.

Author
Rafael Dellen
Date of publication
2014-09-12 10:12:09
Maintainer
Rafael Dellen <Rafael.Dellen@uni-duesseldorf.de>
License
GPL-3
Version
1.1.0

View on CRAN

Man pages

compHomToPepFasta
Comparison of proteins and creating homologous peptides...
ExampleDataSets
Summary of example data sets.
snvToPepFasta
Single nucleotide variant (SNV) to peptide workflow

Files in this package

PepPrep
PepPrep/inst
PepPrep/inst/extdata
PepPrep/inst/extdata/ExampleData.RData
PepPrep/inst/extdata/myTest_snvToPep.fasta
PepPrep/inst/extdata/ExampleHomo_sapiens.GRCh37.70.pep.all.fa
PepPrep/inst/extdata/ExampleHumanProt.fasta
PepPrep/inst/extdata/ExampleMouseProt.fasta
PepPrep/NAMESPACE
PepPrep/R
PepPrep/R/CompHomPep_functions.R
PepPrep/R/SNVtoPep_functions.R
PepPrep/MD5
PepPrep/DESCRIPTION
PepPrep/ChangeLog
PepPrep/man
PepPrep/man/compHomToPepFasta.Rd
PepPrep/man/snvToPepFasta.Rd
PepPrep/man/ExampleDataSets.Rd