Summary of example data sets.

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Description

Explaining example data of PepPrep package.

Details

ExampleData.RData’ contains a data.frame called testtbl (annotated single nucleotide variant (SNV)).
Columns in testtbl:
Chr: Chromosom number
Start: Startposition
End: Endposition
Ref: Nucleotide in referencegenome
Obs: Observed Nucleotide
AAChange: Information from ANNOVAR it should look like NM_ID:c.Ref_Pos_Obs:p.RefAminoacid_Pos_MutAminoacid
Gene: Gene name

ExampleHomo_sapiens.GRCh37.70.pep.all.fa
Contains the Ensembl protein ENSP00000361883 in FASTA format

ExampleHumanProt.fasta
Two human protein sequneces from UniProt.

ExampleMouseProt.fasta
Two mouse protein sequences from UniProt.

Examples

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testtbl <- system.file("extdata", "ExampleData.RData", package="PepPrep")
load(testtbl)
testtbl
attributes(testtbl)
lapply(testtbl,class)