Perc: Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network
Version 0.1.2

To find the certainty of dominance interactions with indirect interactions being considered.

Browse man pages Browse package API and functions Browse package files

AuthorKevin Fujii [aut], Jian Jin [aut, cre], Aaron Shev [aut], Brianne Beisner [aut], Brenda McCowan [aut, cph], Hsieh Fushing [aut, cph]
Date of publication2016-12-05 18:28:46
MaintainerJian Jin <jinjian.pku@gmail.com>
LicenseGPL (>= 2)
Version0.1.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Perc")

Man pages

as.conflictmat: convert to a matrix of 'conf.mat' class
bradleyTerry: Computes the MLE for the BT model using an MM algorithm
bt.test: Systemic test for the assumptions of the Bradley-Terry model
conductance: compute win-loss probabilities
countPaths: count paths between all pairs
dyadicLongConverter: dyadic long format converter
findAllPaths: Identifies all paths between all pairs of less than or equal...
findIDpaths: find all paths of a certain length for an individual
getAllCosts: Associate each costs with its corresponding simulated...
getAllRankOrder: assign IDs to all best rank orders
getBestRankOrder: assign IDs to the best rank order
getSimOutput: get useful outputs from simulated annealing processes
individualDomProb: individual-level probability converter
Perc: Perc.
plotConfmat: generate heat map for a matrix
plotProbDiagnosis: Diagnosis Plot 'plotProbDiagnosis' generate heat map for...
sampleEdgelist: sampleEdgelist. social interactions among 11 monkeys
sampleRawMatrix: sampleRawMatrix. dominance interactions between 39 monkeys
sampleWeightedEdgelist: sampleWeightedEdgelist. dominance interactions among 29...
simRankOrder: Find rank order using simulated annealing
transitivity: calculate transitivity measurements for a matrix
valueConverter: win-loss probability matrix value converter

Functions

AP Source code
BTLogLik Source code
Cost Source code
FindNeighbor Source code
IDpaths Source code
Perc Man page
Perc-package Man page
Reorder Source code
SimAnneal Source code
Temp Source code
allPaths Source code
as.conflictmat Man page Source code
bradleyTerry Man page Source code
bt.cond.dist Source code
bt.test Man page Source code
conductance Man page Source code
convertToProb Source code
countPaths Man page Source code
dyadicLongConverter Man page Source code
edgelisttomatrix Source code
findAllPaths Man page Source code
findIDpaths Man page Source code
getAllCosts Man page Source code
getAllRankOrder Man page Source code
getBestRankOrder Man page Source code
getSimOutput Man page Source code
individualDomProb Man page Source code
match.2coldf Source code
myrecode Source code
plotConfmat Man page Source code
plotProbDiagnosis Man page Source code
sampleBTConf Source code
sampleDist Source code
sampleEdgelist Man page
sampleRawMatrix Man page
sampleWeightedEdgelist Man page
simRankOrder Man page Source code
sumDuplicate Source code
transitivity Man page Source code
valueConverter Man page Source code

Files

inst
inst/doc
inst/doc/Perc.Rmd
inst/doc/Perc.html
inst/doc/Perc.R
tests
tests/testthat.R
tests/testthat
tests/testthat/test-plotConfMat.R
tests/testthat/bradleyTerryoutput1.rds
tests/testthat/output1.rds
tests/testthat/test-transitivity.R
tests/testthat/test-as.conflictmat.R
tests/testthat/test-conductance.R
tests/testthat/countPathsOutput1.rds
tests/testthat/findIDpathsOutput3.rds
tests/testthat/simOutput1.rds
tests/testthat/test-findAllPaths.R
tests/testthat/conductanceOutput2.rds
tests/testthat/conductanceOutput1.rds
tests/testthat/test-bradleyTerry.R
tests/testthat/findIDpathsOutput2.rds
tests/testthat/test-countPaths.R
tests/testthat/findIDpathsOutput1.rds
tests/testthat/valueConverterOutput.rds
tests/testthat/plotConfMatOutput1.rds
tests/testthat/findAllPathsOutput1.rds
tests/testthat/test-findIDpaths.R
tests/testthat/test-Converters.R
tests/testthat/findAllPathsOutput2.rds
tests/testthat/individualDomProbOutput.rds
tests/testthat/transitivityOutput1.rds
tests/testthat/conductanceOutput3.rds
tests/testthat/countPathsOutput2.rds
tests/testthat/countPathsOutput3.rds
tests/testthat/dyadicLongConverterOutput.rds
tests/testthat/asConflictoutput1.rds
tests/testthat/findAllPathsOutput3.rds
NAMESPACE
data
data/sampleWeightedEdgelist.rda
data/sampleRawMatrix.rda
data/sampleEdgelist.rda
R
R/allPaths.R
R/sampleRawMatrix.R
R/transitivity.R
R/sampleWeightedEdgelist.R
R/conductance.R
R/myrecode.R
R/findAllRankOrder.R
R/sim.rank.order.R
R/bt.test.R
R/findAllPaths.R
R/SimAnneal_profile.R
R/Perc.R
R/countPaths.R
R/bradleyTerry.R
R/BTinternal.R
R/IDpaths.R
R/sampleEdgelist.R
R/findIDpaths.R
R/plot.conf.prob.diagnosis.R
R/plot.conf.mat.R
R/imports.R
R/as.conflictmat.R
vignettes
vignettes/Perc.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/conductance.Rd
man/valueConverter.Rd
man/sampleWeightedEdgelist.Rd
man/simRankOrder.Rd
man/bradleyTerry.Rd
man/Perc.Rd
man/sampleRawMatrix.Rd
man/getAllCosts.Rd
man/individualDomProb.Rd
man/as.conflictmat.Rd
man/findAllPaths.Rd
man/dyadicLongConverter.Rd
man/countPaths.Rd
man/transitivity.Rd
man/sampleEdgelist.Rd
man/bt.test.Rd
man/plotConfmat.Rd
man/getAllRankOrder.Rd
man/getSimOutput.Rd
man/findIDpaths.Rd
man/getBestRankOrder.Rd
man/plotProbDiagnosis.Rd
Perc documentation built on May 19, 2017, 6:04 p.m.