Perc: Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network

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To find the certainty of dominance interactions with indirect interactions being considered.

Author
Kevin Fujii [aut], Jian Jin [aut, cre], Aaron Shev [aut], Brianne Beisner [aut], Brenda McCowan [aut, cph], Hsieh Fushing [aut, cph]
Date of publication
2016-12-05 18:28:46
Maintainer
Jian Jin <jinjian.pku@gmail.com>
License
GPL (>= 2)
Version
0.1.2

View on CRAN

Man pages

as.conflictmat
convert to a matrix of 'conf.mat' class
bradleyTerry
Computes the MLE for the BT model using an MM algorithm
bt.test
Systemic test for the assumptions of the Bradley-Terry model
conductance
compute win-loss probabilities
countPaths
count paths between all pairs
dyadicLongConverter
dyadic long format converter
findAllPaths
Identifies all paths between all pairs of less than or equal...
findIDpaths
find all paths of a certain length for an individual
getAllCosts
Associate each costs with its corresponding simulated...
getAllRankOrder
assign IDs to all best rank orders
getBestRankOrder
assign IDs to the best rank order
getSimOutput
get useful outputs from simulated annealing processes
individualDomProb
individual-level probability converter
Perc
Perc.
plotConfmat
generate heat map for a matrix
plotProbDiagnosis
Diagnosis Plot 'plotProbDiagnosis' generate heat map for...
sampleEdgelist
sampleEdgelist. social interactions among 11 monkeys
sampleRawMatrix
sampleRawMatrix. dominance interactions between 39 monkeys
sampleWeightedEdgelist
sampleWeightedEdgelist. dominance interactions among 29...
simRankOrder
Find rank order using simulated annealing
transitivity
calculate transitivity measurements for a matrix
valueConverter
win-loss probability matrix value converter

Files in this package

Perc
Perc/inst
Perc/inst/doc
Perc/inst/doc/Perc.Rmd
Perc/inst/doc/Perc.html
Perc/inst/doc/Perc.R
Perc/tests
Perc/tests/testthat.R
Perc/tests/testthat
Perc/tests/testthat/test-plotConfMat.R
Perc/tests/testthat/bradleyTerryoutput1.rds
Perc/tests/testthat/output1.rds
Perc/tests/testthat/test-transitivity.R
Perc/tests/testthat/test-as.conflictmat.R
Perc/tests/testthat/test-conductance.R
Perc/tests/testthat/countPathsOutput1.rds
Perc/tests/testthat/findIDpathsOutput3.rds
Perc/tests/testthat/simOutput1.rds
Perc/tests/testthat/test-findAllPaths.R
Perc/tests/testthat/conductanceOutput2.rds
Perc/tests/testthat/conductanceOutput1.rds
Perc/tests/testthat/test-bradleyTerry.R
Perc/tests/testthat/findIDpathsOutput2.rds
Perc/tests/testthat/test-countPaths.R
Perc/tests/testthat/findIDpathsOutput1.rds
Perc/tests/testthat/valueConverterOutput.rds
Perc/tests/testthat/plotConfMatOutput1.rds
Perc/tests/testthat/findAllPathsOutput1.rds
Perc/tests/testthat/test-findIDpaths.R
Perc/tests/testthat/test-Converters.R
Perc/tests/testthat/findAllPathsOutput2.rds
Perc/tests/testthat/individualDomProbOutput.rds
Perc/tests/testthat/transitivityOutput1.rds
Perc/tests/testthat/conductanceOutput3.rds
Perc/tests/testthat/countPathsOutput2.rds
Perc/tests/testthat/countPathsOutput3.rds
Perc/tests/testthat/dyadicLongConverterOutput.rds
Perc/tests/testthat/asConflictoutput1.rds
Perc/tests/testthat/findAllPathsOutput3.rds
Perc/NAMESPACE
Perc/data
Perc/data/sampleWeightedEdgelist.rda
Perc/data/sampleRawMatrix.rda
Perc/data/sampleEdgelist.rda
Perc/R
Perc/R/allPaths.R
Perc/R/sampleRawMatrix.R
Perc/R/transitivity.R
Perc/R/sampleWeightedEdgelist.R
Perc/R/conductance.R
Perc/R/myrecode.R
Perc/R/findAllRankOrder.R
Perc/R/sim.rank.order.R
Perc/R/bt.test.R
Perc/R/findAllPaths.R
Perc/R/SimAnneal_profile.R
Perc/R/Perc.R
Perc/R/countPaths.R
Perc/R/bradleyTerry.R
Perc/R/BTinternal.R
Perc/R/IDpaths.R
Perc/R/sampleEdgelist.R
Perc/R/findIDpaths.R
Perc/R/plot.conf.prob.diagnosis.R
Perc/R/plot.conf.mat.R
Perc/R/imports.R
Perc/R/as.conflictmat.R
Perc/vignettes
Perc/vignettes/Perc.Rmd
Perc/MD5
Perc/build
Perc/build/vignette.rds
Perc/DESCRIPTION
Perc/man
Perc/man/conductance.Rd
Perc/man/valueConverter.Rd
Perc/man/sampleWeightedEdgelist.Rd
Perc/man/simRankOrder.Rd
Perc/man/bradleyTerry.Rd
Perc/man/Perc.Rd
Perc/man/sampleRawMatrix.Rd
Perc/man/getAllCosts.Rd
Perc/man/individualDomProb.Rd
Perc/man/as.conflictmat.Rd
Perc/man/findAllPaths.Rd
Perc/man/dyadicLongConverter.Rd
Perc/man/countPaths.Rd
Perc/man/transitivity.Rd
Perc/man/sampleEdgelist.Rd
Perc/man/bt.test.Rd
Perc/man/plotConfmat.Rd
Perc/man/getAllRankOrder.Rd
Perc/man/getSimOutput.Rd
Perc/man/findIDpaths.Rd
Perc/man/getBestRankOrder.Rd
Perc/man/plotProbDiagnosis.Rd