Man pages for PhenotypeR
Assess Study Cohorts Using a Common Data Model
| addCodelistAttribute | Adds the cohort_codelist attribute to a cohort |
| codelistDiagnostics | Run codelist-level diagnostics |
| cohortDiagnostics | Run cohort-level diagnostics |
| cohortDoc | Helper for consistent documentation of 'cohort'. |
| databaseDiagnostics | Database diagnostics |
| directoryDoc | Helper for consistent documentation of 'directory'. |
| expectationsDoc | Helper for consistent documentation of 'expectations'. |
| getCohortExpectations | Get cohort expectations using an LLM |
| matchedDoc | Helper for consistent documentation of 'matched'. |
| mockPhenotypeR | Function to create a mock cdm reference for mockPhenotypeR |
| phenotypeDiagnostics | Phenotype a cohort |
| PhenotypeR-package | PhenotypeR: Assess Study Cohorts Using a Common Data Model |
| pipe | Pipe operator |
| populationDiagnostics | Population-level diagnostics |
| populationSampleDoc | Helper for consistent documentation of 'populationSample'. |
| reexports | Objects exported from other packages |
| resultDoc | Helper for consistent documentation of 'result'. |
| shinyDiagnostics | Create a shiny app summarising your phenotyping results |
| survivalDoc | Helper for consistent documentation of 'survival'. |
| tableCohortExpectations | Create a table summarising cohort expectations |
