cohortDiagnostics: Run cohort-level diagnostics

In PhenotypeR: Assess Study Cohorts Using a Common Data Model

Run cohort-level diagnostics

Description

Runs phenotypeR diagnostics on the cohort. The diganostics include: * Age groups and sex summarised. * A summary of visits of everyone in the cohort using visit_occurrence table. * A summary of age and sex density of the cohort. * Attritions of the cohorts. * Overlap between cohorts (if more than one cohort is being used).

Usage

cohortDiagnostics(cohort)

Arguments

cohort

Cohort table in a cdm reference

Value

A summarised result

Examples

library(PhenotypeR)

cdm <- mockPhenotypeR()

result <- cohortDiagnostics(cdm$my_cohort)

CDMConnector::cdmDisconnect(cdm = cdm)

PhenotypeR documentation built on April 3, 2025, 10:46 p.m.