shinyDiagnostics: Create a shiny app summarising your phenotyping results

In PhenotypeR: Assess Study Cohorts Using a Common Data Model

Create a shiny app summarising your phenotyping results

Description

A shiny app that is designed for any diagnostics results from phenotypeR, this includes:

* A diagnostics on the database via 'databaseDiagnostics'. * A diagnostics on the cohort_codelist attribute of the cohort via 'codelistDiagnostics'. * A diagnostics on the cohort via 'cohortDiagnostics'. * A diagnostics on the population via 'populationDiagnostics'. * A diagnostics on the matched cohort via 'matchedDiagnostics'.

Usage

shinyDiagnostics(
  result,
  directory,
  minCellCount = 5,
  open = rlang::is_interactive()
)

Arguments

result	A summarised result
directory	Directory where to save report
minCellCount	Minimum cell count for suppression when exporting results.
open	If TRUE, the shiny app will be launched in a new session. If FALSE, the shiny app will be created but not launched.

Value

A shiny app

Examples

library(PhenotypeR)

cdm <- mockPhenotypeR()

result <- phenotypeDiagnostics(cdm$my_cohort)

shinyDiagnostics(result, tempdir())

CDMConnector::cdmDisconnect(cdm = cdm)

PhenotypeR documentation built on April 3, 2025, 10:46 p.m.