Files in PhyloMeasures

Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures

MD5

DESCRIPTION

NAMESPACE

R/PhyloMeasures.R

src/Phylogenetic_tree_bimodal_impl.h

src/Exception_related_types.h

src/Phylogenetic_measures.h

src/Phylogenetic_tree_base_impl.h

src/Tree_node.h

src/Phylogenetic_tree_base.h

src/Phylogenetic_tree_bimodal.h

src/PhyloMeasures.cpp

src/Phylogenetic_measures_kernel.h

src/Numeric_traits_double.h

src/Random_samplers.h

src/Incremental_Monte_Carlo_types/Incremental_Monte_Carlo_handler.h

src/Incremental_Monte_Carlo_types/Incremental_Monte_Carlo_handler_impl.h

src/Tree_node_types/Tree_node_bimodal.h

src/Tree_node_types/Tree_node_unimodal.h

src/Tree_node_types/Community_distance_nearest_taxon_node_type.h

src/Tree_node_types/Mean_nearest_taxon_distance_node_type.h

src/Exception_related_types/Exception_type.h

src/Exception_related_types/Exception_functor.h

src/Random_samplers/R_style_sampler.h

src/Random_samplers/Sequential_sampler.h

src/Random_samplers/Uniform_sampler.h

src/Numeric_traits_types/Protected_number_type.h

src/Measures/Community_distance.h

src/Measures/Poisson_binomial_moments_Mean_pairwise_distance.h

src/Measures/Common_branch_length_impl.h

src/Measures/Phylogenetic_diversity.h

src/Measures/Phylogenetic_diversity_impl.h

src/Measures/Poisson_binomial_moments_Phylogenetic_diversity.h

src/Measures/Phylogenetic_Sorensens_similarity.h

src/Measures/Common_branch_length.h

src/Measures/Poisson_binomial_moments_Mean_nearest_taxon_distance.h

src/Measures/Mean_pairwise_distance_impl.h

src/Measures/Core_ancestor_cost.h

src/Measures/Unique_fraction.h

src/Measures/Unique_fraction_impl.h

src/Measures/Mean_nearest_taxon_distance_impl.h

src/Measures/Community_distance_nearest_taxon.h

src/Measures/Core_ancestor_cost_impl.h

src/Measures/Mean_pairwise_distance.h

src/Measures/Community_distance_nearest_taxon_impl.h

src/Measures/Measure_base.h

src/Measures/Mean_nearest_taxon_distance.h

src/Measures/Poisson_binomial_types.h

src/Measures/Community_distance_impl.h

src/Measures/Phylogenetic_Sorensens_similarity_impl.h

src/Measures/Polynomial_related_types.h

src/Measures/Measure_base/Measure_base_bimodal_impl.h

src/Measures/Measure_base/Measure_base_unimodal.h

src/Measures/Measure_base/Mean_pairwise_distance_base_impl.h

src/Measures/Measure_base/Mean_pairwise_distance_base.h

src/Measures/Measure_base/Measure_base_unimodal_impl.h

src/Measures/Measure_base/Measure_base_bimodal.h

src/Measures/Polynomial_related_types/Polynomial_rep.h

man/unifrac.query.Rd man/pd.pvalues.Rd man/mpd.query.Rd man/PhyloMeasures-package.Rd man/pd.moments.Rd man/cbl.moments.Rd man/cdnt.directed.query.Rd man/cbl.query.Rd man/mpd.pvalues.Rd man/cd.query.Rd man/mntd.moments.Rd man/cac.query.Rd man/phylosor.query.Rd man/cdnt.averaged.query.Rd man/cd.moments.Rd man/mntd.pvalues.Rd man/cdnt.query.Rd man/mntd.query.Rd man/cac.moments.Rd man/mpd.moments.Rd man/cac.pvalues.Rd man/pd.query.Rd

tests/test.tre

tests/tests.R

PhyloMeasures documentation built on May 2, 2019, 6:17 a.m.