PoiClaClu: Classification and clustering of sequencing data based on a Poisson model

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Implements the methods described in the paper, Witten (2011) Classification and Clustering of Sequencing Data using a Poisson Model, Annals of Applied Statistics 5(4) 2493-2518.

Author
Daniela Witten
Date of publication
2013-12-02 21:32:30
Maintainer
Daniela Witten <dwitten@u.washington.edu>
License
GPL-2
Version
1.0.2

View on CRAN

Man pages

Classify
Classify observations using a Poisson model.
Classify.cv
Function to do cross-validation for Poisson classification.
ColorDendrogram
Color the leaves in a hierarchical clustering dendrogram
CountDataSet
Generate a simulated sequencing data set using a negative...
FindBestTransform
Find the power transformation that makes a data set...
PoiClaClu-internal
Internal PoiClaClu functions
PoiClaClu-package
Classification and clustering of RNA sequencing data using a...
PoissonDistance
Given a n-by-p data matrix, compute the corresponding n-by-n...

Files in this package

PoiClaClu
PoiClaClu/NAMESPACE
PoiClaClu/R
PoiClaClu/R/PoissonDistance.R
PoiClaClu/R/Classify.cv.R
PoiClaClu/R/Functions.R
PoiClaClu/R/NullModel.R
PoiClaClu/R/NullModelTest.R
PoiClaClu/R/FindBestTransform.R
PoiClaClu/R/CountDataSet.R
PoiClaClu/R/Classify.R
PoiClaClu/MD5
PoiClaClu/DESCRIPTION
PoiClaClu/man
PoiClaClu/man/Classify.cv.Rd
PoiClaClu/man/PoissonDistance.Rd
PoiClaClu/man/Classify.Rd
PoiClaClu/man/PoiClaClu-package.Rd
PoiClaClu/man/ColorDendrogram.Rd
PoiClaClu/man/FindBestTransform.Rd
PoiClaClu/man/PoiClaClu-internal.Rd
PoiClaClu/man/CountDataSet.Rd