API for PolyHaplotyper
Assignment of Haplotypes Based on SNP Dosages in Diploids and Polyploids
| Global functions | |
|---|---|
| addNewMrkdids | Source code |
| allHaplotypes | Man page Source code |
| allhap | Man page Source code |
| build_ahccompletelist | Man page Source code |
| calcAllhapcomb4mrkdid | Source code |
| calcFSstats | Source code |
| calcMrkHaptable | Man page Source code |
| calcPedstats | Source code |
| calcStatistics | Man page Source code |
| checkFS_OneParent | Source code |
| checkFS_TwoParents | Source code |
| checkHaploblock | Source code |
| checkmrkDosage | Man page Source code |
| checkpops | Source code |
| chisq.probtest | Source code |
| compareHapMrkDosages | Man page Source code |
| compareHapresults | Man page Source code |
| completeAllHaploComb | Source code |
| demo_ped | Man page |
| demo_snpdos | Man page |
| expandHapdos | Man page Source code |
| findcomb_wReplacement | Source code |
| findpos_wReplacement | Source code |
| getAllHapcomb | Source code |
| getConsensusmrkDosage | Source code |
| getFScombs | Source code |
| getFSfreqs | Man page Source code |
| getFSfreqs_gamfrq | Source code |
| getGameteFreqs | Man page Source code |
| getHapcombCount_1mrk | Source code |
| getHapcombFreq | Source code |
| getHaploblockResults | Source code |
| getHaplotypeNames | Source code |
| getLinkedFSgroups | Source code |
| getNewMrkdids | Source code |
| getahcdir | Source code |
| hapOneBlock | Source code |
| hapcomb2hapdos | Man page Source code |
| hapcomb2hapindex | Source code |
| hapcomb2mrkdos | Source code |
| hapcomb_from_IHlist | Source code |
| hapdos2hapcomb | Man page Source code |
| hapdos2mrkdos | Man page Source code |
| hapindex2hapcomb | Source code |
| haploblock_df2list | Man page Source code |
| haplofrqMinMax | Source code |
| inferHaplotypes | Man page Source code |
| inferHaps_noFS | Source code |
| loadAllHapcombLists | Source code |
| make.Happyinf.input | Man page |
| make.SATlotyper.input | Man page |
| make.ShesisPlus.input | Man page |
| mergeReplicates | Man page Source code |
| mrkdid2mrkdos | Man page Source code |
| mrkdidfun | Source code |
| mrkdos2mrkdid | Man page Source code |
| overviewByFS | Man page Source code |
| padded | Man page Source code |
| pedigreeHapCheck | Man page Source code |
| pedigreeHapCheck_OneHaploblock | Source code |
| pedigreeSim2PH | Man page Source code |
| phFS | Man page |
| phblocks | Man page |
| phdos | Man page |
| phpar | Man page |
| phped | Man page |
| phresults | Man page |
| read.Happyinf.output | Man page Source code |
| read.SATlotyper.output | Man page Source code |
| read.ShesisPlus.output | Man page Source code |
| run.SATlotyper | Man page Source code |
| showOneFS | Man page Source code |
| single_cycle_infer | Source code |
| solveOneFS | Source code |
| split_hapnames | Source code |
| testFSseg | Source code |
| totHapcombCount | Man page Source code |
| usedhap | Man page Source code |
