allHaplotypes: get all haplotypes for the given markers
In PolyHaplotyper: Assignment of Haplotypes Based on SNP Dosages in Diploids and Polyploids
Description
Usage
Arguments
Value
Examples
View source: R/PolyHaplotyper.R
Description
Given a set of bi-allelic (SNP) marker names, generate all
possible haplotypes
Usage
1
allHaplotypes(mrknames)
Arguments
mrknames
the names of the (bi-allelic) markers in the
haploblock (contig)
Value
a matrix with markers in columns and all possible (2 ^ nmrk)
haplotypes in rows. 0: haplotype contains the non-dosage-counted marker
allele (the reference allele); 1: haplotype contains the dosage-counted
(alternative) marker allele. The colnames are the marker names.
Examples
1
2
# show the 8 possible haplotypes with 3 bi-allelic markers:
allHaplotypes(mrknames=c("mrkA", "mrkB", "mrkC"))
PolyHaplotyper documentation built on June 17, 2021, 5:12 p.m.
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Description Usage Arguments Value Examples
View source: R/PolyHaplotyper.R
Description
Given a set of bi-allelic (SNP) marker names, generate all possible haplotypes
Usage
1 | allHaplotypes(mrknames)
|
Arguments
mrknames |
the names of the (bi-allelic) markers in the haploblock (contig) |
Value
a matrix with markers in columns and all possible (2 ^ nmrk) haplotypes in rows. 0: haplotype contains the non-dosage-counted marker allele (the reference allele); 1: haplotype contains the dosage-counted (alternative) marker allele. The colnames are the marker names.
Examples
1 2 | # show the 8 possible haplotypes with 3 bi-allelic markers:
allHaplotypes(mrknames=c("mrkA", "mrkB", "mrkC"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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