PolyPatEx: Paternity Exclusion in Autopolyploid Species

Functions to perform paternity exclusion via allele matching, in autopolyploid species having ploidy 4, 6, or 8. The marker data used can be genotype data (copy numbers known) or 'allelic phenotype data' (copy numbers not known).

AuthorAlexander Zwart
Date of publication2016-04-11 09:06:29
MaintainerAlexander Zwart <Alec.Zwart@csiro.au>
LicenseGPL-3 + file LICENSE
Version0.9.2

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Files in this package

PolyPatEx
PolyPatEx/inst
PolyPatEx/inst/tests
PolyPatEx/inst/tests/test-all.R
PolyPatEx/inst/extdata
PolyPatEx/inst/extdata/FR_Genotype.csv
PolyPatEx/inst/extdata/GF_Phenotype.csv
PolyPatEx/inst/doc
PolyPatEx/inst/doc/PolyPatEx-vignette.Rnw
PolyPatEx/inst/doc/PolyPatEx-vignette.pdf
PolyPatEx/NAMESPACE
PolyPatEx/data
PolyPatEx/data/FR_Genotype.rda
PolyPatEx/data/GF_Phenotype.rda
PolyPatEx/R
PolyPatEx/R/preprocessData.R PolyPatEx/R/multilocusTypes.R PolyPatEx/R/potentialFatherIDs.R PolyPatEx/R/checkForValidPPEOutputObj.R PolyPatEx/R/checkForValidPPEDataset.R PolyPatEx/R/getMPPhenotypeFromCount.R PolyPatEx/R/potentialFatherCounts.R PolyPatEx/R/inputData.R PolyPatEx/R/PolyPatEx-package.R
PolyPatEx/R/sysdata.rda
PolyPatEx/R/getProgenyStatusPhenot.R PolyPatEx/R/CMPStatusLookupTablePloidy6.R PolyPatEx/R/foreignAlleles.R PolyPatEx/R/GF_Phenotype.R PolyPatEx/R/getAllPossGenotsFromPhenot.R PolyPatEx/R/removeMismatches.R PolyPatEx/R/genotPPE.R PolyPatEx/R/CMPStatusLookupTablePloidy4.R PolyPatEx/R/Phenot.getAllPossMPGenots.R PolyPatEx/R/getProgenyStatusGenot.R PolyPatEx/R/stripNAs.R PolyPatEx/R/FR_Genotype.R PolyPatEx/R/fixCSV.R PolyPatEx/R/phenotPPE.R PolyPatEx/R/CMPStatusLookupTablePloidy8.R PolyPatEx/R/getPossMPPhenotCounts.R PolyPatEx/R/Phenot.getProgenyStatusLookup.R PolyPatEx/R/getAllPossMPPhenotypes.R PolyPatEx/R/convertToPhenot.R
PolyPatEx/vignettes
PolyPatEx/vignettes/PolyPatExDataSchematic.pdf
PolyPatEx/vignettes/PolyPatEx-vignette.Rnw
PolyPatEx/README.md
PolyPatEx/MD5
PolyPatEx/build
PolyPatEx/build/vignette.rds
PolyPatEx/DESCRIPTION
PolyPatEx/man
PolyPatEx/man/potentialFatherCounts.Rd PolyPatEx/man/potentialFatherIDs.Rd PolyPatEx/man/phenotPPE.Rd PolyPatEx/man/fixCSV.Rd PolyPatEx/man/preprocessData.Rd PolyPatEx/man/genotPPE.Rd PolyPatEx/man/multilocusTypes.Rd PolyPatEx/man/inputData.Rd PolyPatEx/man/foreignAlleles.Rd PolyPatEx/man/FR_Genotype.Rd PolyPatEx/man/convertToPhenot.Rd PolyPatEx/man/PolyPatEx-package.Rd PolyPatEx/man/GF_Phenotype.Rd
PolyPatEx/LICENSE

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