Man pages for QCGWAS
Quality Control of Genome Wide Association Study Results
| calc_kurtosis | Skewness and Kurtosis |
| check_P | Checking GWAS p-values |
| convert_impstatus | Convert imputation-status values to the QCGWAS standard |
| create_hapmap_reference | Create an allele-reference file from HapMap data |
| filter_GWAS | Automated filtering and reformatting of GWAS results files |
| gwa_sample | Sample dataset for the QCGWAS package |
| header_translations | Translation table for GWAS dataset headers |
| HQ_filter | Select high-quality data in GWAS datasets |
| identify_column | Identify non-standard column names |
| intensity_plot | Generates an intensity plot from x, y datasets |
| load_GWAS | Easy loading of GWAS results files |
| match_alleles | Check and correct alleles in GWAS result files |
| plot_distribution | GWAS effect-Size distribution plot |
| plot_precision | GWAS Precision Plot |
| plot_regional | Regional Association Plot |
| plot_skewness | GWAS Skewness vs. Kurtosis Plot |
| QC_GWAS | Automated Quality Control of GWAS Results files |
| QCGWAS-package | Quality Control of Genome Wide Association Study Results |
| QC_histogram | Histogram(s) of expected and observed data distribution |
| QC_plots | QQ and Manhattan plots |
| QQ_plot | QQ plot(s) of expected vs. reported p-values |
| save_log | Log entries for QC_GWAS |
| switch_strand | Convert alleles to the opposing DNA strand |
| translate_header | Translate column names into standard names |
