QGglmm: Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models
Version 0.5.1

Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.

Browse man pages Browse package API and functions Browse package files

AuthorPierre de Villemereuil <bonamy@horus.ens.fr>
Date of publication2016-10-02 10:12:23
MaintainerPierre de Villemereuil <bonamy@horus.ens.fr>
LicenseGPL-2
Version0.5.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("QGglmm")

Man pages

QGglmm-package: Quantitative Genetics parameters for Generalised Linear Mixed...
QGicc: Intra-Class Correlation coefficients (ICC) on the observed...
QGlink.funcs: List of functions according to a distribution and a link...
QGmean: Compute the phenotypic mean on the observed scale
QGmvicc: Intra-Class Correlation coefficients (ICC) on the observed...
QGmvmean: Compute the multivariate phenotypic mean on the observed...
QGmvparams: Quantitative Genetics parameters from GLMM estimates...
QGmvpred: Predict the evolutionary response to selection on the...
QGmvpsi: Compute a multivariate "Psi" (used to compute the additive...
QGparams: Quantitative Genetics parameters from GLMM estimates.
QGpred: Predict the evolutionary response to selection on the...
QGpsi: Compute "Psi" (used to compute the additive genetic variance...
QGvar.dist: Compute the distribution variance
QGvar.exp: Compute the variance of expected values (i.e. the latent...
QGvcov: Compute the phenotypic variance-covariance matrix on the...

Functions

QGglmm Man page
QGglmm-package Man page
QGicc Man page Source code
QGlink.funcs Man page Source code
QGmean Man page Source code
QGmvicc Man page Source code
QGmvmean Man page Source code
QGmvparams Man page Source code
QGmvpred Man page Source code
QGmvpsi Man page Source code
QGparams Man page Source code
QGpred Man page Source code
QGpsi Man page Source code
QGvar.dist Man page Source code
QGvar.exp Man page Source code
QGvcov Man page Source code
qg.Gaussian Source code
qg.Gaussian.icc Source code
qg.Poisson.log Source code
qg.Poisson.log.icc Source code
qg.Poisson.sqrt Source code
qg.binom1.probit Source code
qg.binom1.probit.icc Source code
qg.binomN.probit Source code
qg.binomN.probit.icc Source code
qg.negbin.log Source code
qg.negbin.log.icc Source code
qg.negbin.sqrt Source code
qg.ordinal Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/QGglmmHowTo.Rnw
inst/doc/QGglmmHowTo.pdf
NAMESPACE
NEWS.md
R
R/source.icc.R
R/source.mv.R
R/source.ordinal.R
R/source.R
vignettes
vignettes/perso_sorted_en.bst
vignettes/QGglmmHowTo.Rnw
vignettes/Vignette.bib
vignettes/Figs
vignettes/Figs/threshold.pdf
vignettes/Figs/latent.pdf
vignettes/Figs/expected.pdf
vignettes/Figs/observed.pdf
vignettes/Figs/3scales.pdf
vignettes/bigcenter.sty
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/QGlink.funcs.Rd
man/QGmvicc.Rd
man/QGmvpred.Rd
man/QGpred.Rd
man/QGvar.dist.Rd
man/QGmean.Rd
man/QGicc.Rd
man/QGvcov.Rd
man/QGglmm-package.Rd
man/QGpsi.Rd
man/QGmvparams.Rd
man/QGmvpsi.Rd
man/QGmvmean.Rd
man/QGparams.Rd
man/QGvar.exp.Rd
QGglmm documentation built on May 19, 2017, 6:06 p.m.