QGglmm: Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models

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Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.

Author
Pierre de Villemereuil <bonamy@horus.ens.fr>
Date of publication
2016-10-02 10:12:23
Maintainer
Pierre de Villemereuil <bonamy@horus.ens.fr>
License
GPL-2
Version
0.5.1

View on CRAN

Man pages

QGglmm-package
Quantitative Genetics parameters for Generalised Linear Mixed...
QGicc
Intra-Class Correlation coefficients (ICC) on the observed...
QGlink.funcs
List of functions according to a distribution and a link...
QGmean
Compute the phenotypic mean on the observed scale
QGmvicc
Intra-Class Correlation coefficients (ICC) on the observed...
QGmvmean
Compute the multivariate phenotypic mean on the observed...
QGmvparams
Quantitative Genetics parameters from GLMM estimates...
QGmvpred
Predict the evolutionary response to selection on the...
QGmvpsi
Compute a multivariate "Psi" (used to compute the additive...
QGparams
Quantitative Genetics parameters from GLMM estimates.
QGpred
Predict the evolutionary response to selection on the...
QGpsi
Compute "Psi" (used to compute the additive genetic variance...
QGvar.dist
Compute the distribution variance
QGvar.exp
Compute the variance of expected values (i.e. the latent...
QGvcov
Compute the phenotypic variance-covariance matrix on the...

Files in this package

QGglmm
QGglmm/inst
QGglmm/inst/CITATION
QGglmm/inst/doc
QGglmm/inst/doc/QGglmmHowTo.Rnw
QGglmm/inst/doc/QGglmmHowTo.pdf
QGglmm/NAMESPACE
QGglmm/NEWS.md
QGglmm/R
QGglmm/R/source.icc.R
QGglmm/R/source.mv.R
QGglmm/R/source.ordinal.R
QGglmm/R/source.R
QGglmm/vignettes
QGglmm/vignettes/perso_sorted_en.bst
QGglmm/vignettes/QGglmmHowTo.Rnw
QGglmm/vignettes/Vignette.bib
QGglmm/vignettes/Figs
QGglmm/vignettes/Figs/threshold.pdf
QGglmm/vignettes/Figs/latent.pdf
QGglmm/vignettes/Figs/expected.pdf
QGglmm/vignettes/Figs/observed.pdf
QGglmm/vignettes/Figs/3scales.pdf
QGglmm/vignettes/bigcenter.sty
QGglmm/README.md
QGglmm/MD5
QGglmm/build
QGglmm/build/vignette.rds
QGglmm/DESCRIPTION
QGglmm/man
QGglmm/man/QGlink.funcs.Rd
QGglmm/man/QGmvicc.Rd
QGglmm/man/QGmvpred.Rd
QGglmm/man/QGpred.Rd
QGglmm/man/QGvar.dist.Rd
QGglmm/man/QGmean.Rd
QGglmm/man/QGicc.Rd
QGglmm/man/QGvcov.Rd
QGglmm/man/QGglmm-package.Rd
QGglmm/man/QGpsi.Rd
QGglmm/man/QGmvparams.Rd
QGglmm/man/QGmvpsi.Rd
QGglmm/man/QGmvmean.Rd
QGglmm/man/QGparams.Rd
QGglmm/man/QGvar.exp.Rd