rq.counts: Quantile Regression for Counts

In Qtools: Utilities for Quantiles

Quantile Regression for Counts

Description

This function is used to fit a (log-linear) quantile regression model when the response is a count variable.

Usage

rq.counts(formula, data = sys.frame(sys.parent()), tau = 0.5, subset, weights,
	na.action, contrasts = NULL, offset = NULL, method = "fn", M = 50,
	zeta = 1e-5, B = 0.999, cn = NULL, alpha = 0.05)

Arguments

formula	an object of class formula: a symbolic description of the model to be fitted.
data	an optional data frame, list or environment (or object coercible by as.data.frame to a data frame) containing the variables in the model. If not found in data, the variables are taken from environment(formula), typically the environment from which rq.counts is called.
tau	quantile to be estimated.
subset	an optional vector specifying a subset of observations to be used in the fitting process.
weights	an optional vector of weights to be used in the fitting process.
na.action	a function which indicates what should happen when the data contain NAs.
contrasts	an optional list. See the contrasts.arg of model.matrix.default.
offset	an optional offset to be included in the model frame.
method	estimation method for the fitting process. See rq.
M	number of dithered samples.
zeta	small constant (see References).
B	right boundary for uniform random noise U[0,B] to be added to the response variable (see References).
cn	small constant to be passed to Fn (see Theorem 3, Machado and Santos Silva).
alpha	significance level.

Details

A linear quantile regression model is fitted to the log–transformed response. The notation used here follows closely that of Machado and Santos Silva (2005). This function is based on routines from package quantreg (Koenker, 2016). See also lqm.counts from package lqmm (Geraci, 2014) for Laplace gradient estimation.

As of version 1.4, the transformation of the response cannot be changed. This option may be reinstated in future versions.

Value

a list of class rq.counts containing the following components

call	the matched call.
method	the fitting algorithm for rq.
x	the model matrix.
y	the model response.
tau	the order of the estimated quantile(s).
tsf	tranformation used (see also attributes(tsf)).
coefficients	regression quantile (on the log–scale).
fitted.values	fitted values (on the response scale).
tTable	coefficients, standard errors, etc.
offset	offset.
M	specified number of dithered samples for standard error estimation.
Mn	actual number of dithered samples used for standard error estimation that gave an invertible D matrix (Machado and Santos Silva, 2005).
InitialPar	starting values for coefficients.
terms	the terms object used.
term.labels	names of coefficients.
rdf	the number of residual degrees of freedom.

Author(s)

Marco Geraci

References

Geraci M. Linear quantile mixed models: The lqmm package for Laplace quantile regression. Journal of Statistical Software. 2014;57(13):1-29.

Geraci M and Jones MC. Improved transformation-based quantile regression. Canadian Journal of Statistics 2015;43(1):118-132.

Koenker R. quantreg: Quantile Regression. 2016. R package version 5.29.

Machado JAF, Santos Silva JMC. Quantiles for counts. Journal of the American Statistical Association. 2005;100(472):1226-37.

See Also

residuals.rq.counts, predict.rq.counts, coef.rq.counts, maref.rq.counts

Examples

# Esterase data
data(esterase)

# Fit quantiles 0.25 and 0.75
fit1 <- rq.counts(Count ~ Esterase, tau = 0.25, data = esterase, M = 50)
coef(fit1)
fit2 <- rq.counts(Count ~ Esterase, tau = 0.75, data = esterase, M = 50)
coef(fit2)

# Plot
with(esterase, plot(Count ~ Esterase))
lines(esterase$Esterase, fit1$fitted.values, col = "blue")
lines(esterase$Esterase, fit2$fitted.values, col = "red")
legend(8, 1000, lty = c(1,1), col = c("blue", "red"), legend = c("tau = 0.25","tau = 0.75"))

Qtools documentation built on Nov. 2, 2023, 6:11 p.m.