summary.flFitSpline: Generic summary function for flFitSpline objects

In QurvE: Robust and User-Friendly Analysis of Growth and Fluorescence Curves

Generic summary function for flFitSpline objects

Description

Generic summary function for flFitSpline objects

Usage

## S3 method for class 'flFitSpline'
summary(object, ...)

Arguments

object	object of class flFitSpline
...	Additional arguments. This has currently no effect and is only meant to fulfill the requirements of a generic function.

Value

A dataframe with parameters extracted from a nonparametric fit.

Examples

# load example dataset
input <- read_data(data.growth = system.file("lac_promoters_growth.txt", package = "QurvE"),
                   data.fl = system.file("lac_promoters_fluorescence.txt", package = "QurvE"),
                   csvsep = "\t",
                   csvsep.fl = "\t")

# Extract time and normalized fluorescence data for single sample
time <- input$time[4,]
data <- input$norm.fluorescence[4,-(1:3)] # Remove identifier columns

# Perform linear fit
TestFit <- flFitSpline(time = time,
                       fl_data = data,
                       ID = 'TestFit',
                       control = fl.control(fit.opt = 's', x_type = 'time'))

summary(TestFit)

QurvE documentation built on May 29, 2024, 3 a.m.