Man pages for R0
Estimation of R0 and Real-Time Reproduction Number from Epidemics

censored.deviationImpute censored cases to rebuild longer epidemic vector
check.incidCheck incid in the input
est.GTFind the best-fitting GT distribution for a series of serial...
estimate.REstimate R0 for one incidence dataset using several methods
est.R0.AREstimate R0 from attack rate of an epidemic
est.R0.EGEstimate R from exponential growth rate
est.R0.MLEstimate the reproduction number by maximum likelihood
est.R0.SBEstimate the time dependent reproduction number using a...
est.R0.TDEstimate the time dependent reproduction number
fit.epidCompute the Poisson log - likelihood between epid and...
fit.epid.optimJoint estimation of GT distribution and R
generation.timeGeneration Time distribution
Germany.1918Germany.1918 exemple dataset
get.scaleInternal scaling function to display proper X-Axis labels
GT.chld.hsld2009 A/H1N1 observed Generation Time distribution
H1N1.serial.intervalH1N1 serial interval sample
impute.incidOptimiziation routine for incidence imputation
integrity.checksInput parameters integrity checks
plotfitGeneric S3 method to plot either "R0.R" and "R0.sR" objects
plotfit.R0.RPlot the fit of a model to epidemic data
plotfit.R0.sRPlot the fit of all requested models to epidemic data
plotfitRARInternal plotfit method for AR estimates
plotfitRSBInternal plot method for SB estimates
plotfitRxxInternal plotfit method for EG, ML and TD estimates
plot.R0.GTPrint the characteristics of the generation time distribution
plot.R0.RPlot the R0/Rt value along with confidence interval
plot.R0.SPlot objects from sensitivity.analysis
plot.R0.sRPlot the R0/Rt value along with confidence interval of all...
plotRARInternal plot method for AR estimates
plotREGInternal plot method for EG estimates
plotRMLInternal plot method for ML estimates
plotRSBInternal plot method for SB estimates
plotRTDInternal plot method for TD estimates
print.R0.GTPrint the characteristics of the generation time distribution
print.R0.RPrint the R estimate
print.R0.sRPlot the R0/Rt value along with confidence interval of all...
R0-packageEstimation of R0 and Real-Time Reproduction Number from...
R.from.rCompute the discretized Laplace Transform using a discretized...
sa.GTSensitivity analysis of reproduction ratio with varying GT...
sa.timeSensitivity analysis of basic reproduction ratio to begin/end...
sensitivity.analysisSensitivity analysis of basic reproduction ratio to begin/end...
sim.epidEpidemic outbreak simulation
sim.epid.indivInfluenza-like illness simulation (individual-based model)
smooth.RtSmooth real-time reproduction number over larger time period
R0 documentation built on May 2, 2019, 8:18 a.m.