R2BayesX: Estimate Structured Additive Regression Models with 'BayesX'

An R interface to estimate structured additive regression (STAR) models with 'BayesX'.

AuthorNikolaus Umlauf [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut]
Date of publication2016-11-17 14:34:28
MaintainerNikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
LicenseGPL-2 | GPL-3
Version1.1-0

View on CRAN

Man pages

add.neighbor: Add Neighborhood Relations

bayesx: Estimate STAR Models with BayesX

bayesx.construct: Construct BayesX Model Term Objects

bayesx.control: Control Parameters for BayesX

bayesx.term.options: Show BayesX Term Options

BeechBnd: Beech Location Map

BeechGra: Beech Neighborhood Information

bnd2gra: Convert Boundary Format to Graph Format

colorlegend: Plot a Color Legend

cprob: Extract Contour Probabilities

delete.neighbor: Delete Neighborhood Relations

DIC: Deviance Information Criterion

FantasyBnd: Fantasy Map

fitted.bayesx: Extract BayesX Fitted Values and Residuals

ForestHealth: Forest Health Data

GAMart: GAM Artificial Data Set

GCV: Gerneralized Cross Validation Criterion

GermanyBnd: Germany Map

get.neighbor: Obtain Neighbors of Given Regions

getscript: Generate an executable R fitted model script

GRstats: Compute Gelman and Rubin's convergence diagnostics from...

logfile: BayesX Log-Files

MunichBnd: Munich Map

nbAndGraConversion: Convert nb and gra format into each other

parse.bayesx.input: Parse BayesX Input

plot2d: 2D Effect Plot

plot3d: 3D Effect Plot

plot.bayesx: Default BayesX Plotting

plotblock: Factor Variable and Random Effects Plots

plotmap: Plot Maps

plotsamples: Plot Sampling Path(s) of Coefficient(s) and Variance(s)

predict.bayesx: Prediction from fitted BayesX objects

prgfile: BayesX Program-Files

R2BayesX-package: Estimate STAR Models with BayesX

read.bayesx.output: Read BayesX Output from Directories

read.bnd: Read Geographical Information in Boundary Format

read.gra: Read Geographical Information in Graph Format

runtime: BayesX Program-Runtimes

samples: Extract Samples of Coefficients and Variances

shp2bnd: convert a shape-file into a boundary object

sliceplot: Plot Slices of Bivariate Functions

spAndBndConversion: Convert sp and bnd format into each other

summary.bayesx: Bayesx Summary Statistics

sx: Construct BayesX Model Terms in A Formula

term.freqs: Extract model term selection frequencies.

write.bayesx.input: Write the BayesX Program

write.bnd: Saving Maps in Boundary Format

write.gra: Saving Maps in Graph Format

ZambiaBnd: Zambia Map

ZambiaNutrition: Determinants of Childhood Malnutrition in Zambia

Functions

add.neighbor Man page
bayesx Man page
bayesx.construct Man page
bayesx.construct.bl.smooth.construct Man page
bayesx.construct.factor.smooth.construct Man page
bayesx.construct.gk.smooth.construct Man page
bayesx.construct.gs.smooth.construct Man page
bayesx.construct.kr.smooth.construct Man page
bayesx.construct.lasso.smooth.construct Man page
bayesx.construct.mrf.smooth.construct Man page
bayesx.construct.nigmix.smooth.construct Man page
bayesx.construct.ps.smooth.construct Man page
bayesx.construct.ra.smooth.construct Man page
bayesx.construct.re.smooth.construct Man page
bayesx.construct.ridge.smooth.construct Man page
bayesx.construct.rw1.smooth.construct Man page
bayesx.construct.rw2.smooth.construct Man page
bayesx.construct.season.smooth.construct Man page
bayesx.construct.tensor.smooth.construct Man page
bayesx.construct.te.smooth.construct Man page
bayesx.control Man page
bayesx_logfile Man page
bayesx_prgfile Man page
bayesx_runtime Man page
bayesx.term.options Man page
BeechBnd Man page
BeechGra Man page
bnd2gra Man page
bnd2sp Man page
bxopts Man page
colorlegend Man page
cprob Man page
delete.neighbor Man page
DIC Man page
DIC.bayesx Man page
drawmap Man page
FantasyBnd Man page
fitted.bayesx Man page
forest Man page
ForestHealth Man page
gamart Man page
GAMart Man page
GCV Man page
GCV.bayesx Man page
GermanyBnd Man page
get.neighbor Man page
getscript Man page
gra2nb Man page
GRstats Man page
logfile Man page
MunichBnd Man page
nb2gra Man page
parse.bayesx.input Man page
plot2d Man page
plot3d Man page
plot.bayesx Man page
plotblock Man page
plot.bnd Man page
plotmap Man page
plotnonp Man page
plotsamples Man page
plotsurf Man page
predict.bayesx Man page
prgfile Man page
r2bayesx Man page
R2BayesX Man page
r2bayesx-package Man page
R2BayesX-package Man page
read.bayesx.output Man page
read.bnd Man page
read.gra Man page
residuals.bayesx Man page
runtime Man page
samples Man page
shp2bnd Man page
sliceplot Man page
sp2bnd Man page
summary.bayesx Man page
sx Man page
term.freqs Man page
write.bayesx.input Man page
write.bnd Man page
write.gra Man page
zambia Man page
ZambiaBnd Man page
ZambiaNutrition Man page

Files

R2BayesX
R2BayesX/inst
R2BayesX/inst/examples
R2BayesX/inst/examples/ex01
R2BayesX/inst/examples/ex01/exmodel_FixedEffects1_sample.raw
R2BayesX/inst/examples/ex01/exmodel_scale.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_variance_sample.raw
R2BayesX/inst/examples/ex01/exmodel.data.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_lambda.res
R2BayesX/inst/examples/ex01/exmodel_model_summary.tex
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_variance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_FixedEffects1.res
R2BayesX/inst/examples/ex01/exmodel_scale_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_var.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_lambda.res
R2BayesX/inst/examples/ex01/exmodel_deviance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_predictmean.raw
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_var.res
R2BayesX/inst/examples/Northamerica.shx
R2BayesX/inst/examples/Germany.gra
R2BayesX/inst/examples/Northamerica.dbf
R2BayesX/inst/examples/Germany.bnd
R2BayesX/inst/examples/Northamerica.shp
R2BayesX/inst/examples/ex02
R2BayesX/inst/examples/ex02/surface.raw
R2BayesX/inst/examples/ex02/nonparametric.raw
R2BayesX/inst/examples/ex02/nonparametric_f_x_pspline_sample.raw
R2BayesX/inst/examples/ex02/surface_f_x1_x2_pspline.res
R2BayesX/inst/examples/ex02/nonparametric_f_x_pspline.res
R2BayesX/inst/examples/ex02/nonparametric2_f_time_pspline.res
R2BayesX/inst/CITATION
R2BayesX/src
R2BayesX/src/bayesx.c
R2BayesX/NAMESPACE
R2BayesX/demo
R2BayesX/demo/00Index
R2BayesX/demo/ZambiaNutrition.R
R2BayesX/demo/ForestHealth.R
R2BayesX/data
R2BayesX/data/BeechBnd.rda
R2BayesX/data/FantasyBnd.rda
R2BayesX/data/MunichBnd.rda
R2BayesX/data/GAMart.rda
R2BayesX/data/BeechGra.rda
R2BayesX/data/ZambiaBnd.rda
R2BayesX/data/GermanyBnd.rda
R2BayesX/data/ZambiaNutrition.rda
R2BayesX/data/ForestHealth.rda
R2BayesX/R
R2BayesX/R/d2contrsum.R R2BayesX/R/GRstats.R R2BayesX/R/bayesx.term.options.R R2BayesX/R/plot.linear.bayesx.R R2BayesX/R/plotsamples.R R2BayesX/R/AIC.bayesx.R R2BayesX/R/plotsurf.R R2BayesX/R/r2bayesx-internal.R R2BayesX/R/dopos.R R2BayesX/R/GCV.bayesx.R R2BayesX/R/DIC.R R2BayesX/R/plot3d.R R2BayesX/R/bayesx.construct.lasso.smooth.spec.R R2BayesX/R/pd.R R2BayesX/R/set.plot2d.specs.R R2BayesX/R/term.names.R R2BayesX/R/search.bayesx.models.R R2BayesX/R/logLik.bayesx.R R2BayesX/R/df2m.R R2BayesX/R/plot.bayesx.R R2BayesX/R/s4dim.R R2BayesX/R/c.bayesx.R R2BayesX/R/delete.args.R R2BayesX/R/sfoofun.R R2BayesX/R/fitted.bayesx.R R2BayesX/R/parse.bayesx.input.R R2BayesX/R/drawmap.R R2BayesX/R/delete.Nulls.R R2BayesX/R/smooth.construct.nu.smooth.spec.R R2BayesX/R/make.label.R R2BayesX/R/term.reorder.R R2BayesX/R/r.R R2BayesX/R/help.map.name.R R2BayesX/R/is.sm.R R2BayesX/R/is.rt.R R2BayesX/R/recol.R R2BayesX/R/do.xt.R R2BayesX/R/write.term.info.R R2BayesX/R/model.frame.bayesx.R R2BayesX/R/search.bayesx.tex.R R2BayesX/R/bayesx.construct.ridge.smooth.spec.R R2BayesX/R/ringDirxy.R R2BayesX/R/set.hlevel.stuff.R R2BayesX/R/cpoint.R R2BayesX/R/confbayesx.R R2BayesX/R/sliceplot.R R2BayesX/R/s4class.R R2BayesX/R/plot.mrf.bayesx.R R2BayesX/R/plot.sm.bayesx.R R2BayesX/R/find.smooth.random.R R2BayesX/R/read.bnd.R R2BayesX/R/bayesx.construct.gk.smooth.spec.R R2BayesX/R/cpos.R R2BayesX/R/extract.model.diagnostic.R R2BayesX/R/textfun.R R2BayesX/R/delete.neighbor.R R2BayesX/R/parse.random.bayesx.R R2BayesX/R/edf.R R2BayesX/R/unique.id.R R2BayesX/R/bayesx.construct.ra.smooth.spec.R R2BayesX/R/bayesx.construct.kr.smooth.spec.R R2BayesX/R/split.terms.R R2BayesX/R/residuals.bayesx.R R2BayesX/R/df2m2.R R2BayesX/R/bayesx.reformate.R R2BayesX/R/compute.x.id.R R2BayesX/R/blow.up.resid.R R2BayesX/R/plot.random.bayesx.R R2BayesX/R/sx.R R2BayesX/R/splitme.R R2BayesX/R/get.kde.range.R R2BayesX/R/bayesx.construct.season.smooth.spec.R R2BayesX/R/f2int.R R2BayesX/R/setmfrow.R R2BayesX/R/GAMart.R R2BayesX/R/bayesx.construct.gs.smooth.spec.R R2BayesX/R/shp2bnd.R R2BayesX/R/find.fixed.effects.R R2BayesX/R/plot.fit.bayesx.R R2BayesX/R/samples.R R2BayesX/R/plot2d.default.R R2BayesX/R/plotblock.R R2BayesX/R/bayesx_runtime.R R2BayesX/R/nbAndGraConversion.R R2BayesX/R/plot2d.R R2BayesX/R/DIC.bayesx.R R2BayesX/R/plotnonp.R R2BayesX/R/add.neighbor.R R2BayesX/R/bayesx.construct.bl.smooth.spec.R R2BayesX/R/centroidpos.R R2BayesX/R/VPC.R R2BayesX/R/plot.varying.bayesx.R R2BayesX/R/terms.bayesx.R R2BayesX/R/get.neighbor.R R2BayesX/R/coeffun.R R2BayesX/R/get.eta.R R2BayesX/R/bayesx.control.R R2BayesX/R/which.plots.R R2BayesX/R/bayesx.construct.generic.smooth.spec.R R2BayesX/R/x2int.R R2BayesX/R/predict.bayesx.R R2BayesX/R/mum.R R2BayesX/R/write.bnd.R R2BayesX/R/bayesx.R R2BayesX/R/spAndBndConversion.R R2BayesX/R/bayesx.construct.tensor.smooth.spec.R R2BayesX/R/summary.bayesx.R R2BayesX/R/getscript.R R2BayesX/R/bayesx.construct.factor.smooth.spec.R R2BayesX/R/geo.smooth.spec.R R2BayesX/R/measure.R R2BayesX/R/construct.shrw.R R2BayesX/R/term.freqs.R R2BayesX/R/bnd2gra.R R2BayesX/R/getuit.R R2BayesX/R/write.gra.R R2BayesX/R/get.scale.R R2BayesX/R/interp2.R R2BayesX/R/bayesx.construct.rw1.smooth.spec.R R2BayesX/R/GCV.R R2BayesX/R/bayesx.construct.mrf.smooth.spec.R R2BayesX/R/read.bayesx.model.output.R R2BayesX/R/bayesx.construct.ps.smooth.spec.R R2BayesX/R/make_pal.R R2BayesX/R/find.limits.R R2BayesX/R/smi.R R2BayesX/R/BIC.bayesx.R R2BayesX/R/bayesx_logfile.R R2BayesX/R/centroids.R R2BayesX/R/bayesx.construct.cs.smooth.spec.R R2BayesX/R/is.f.R R2BayesX/R/centroidtext.R R2BayesX/R/write.prg.setup.R R2BayesX/R/read.gra.R R2BayesX/R/plot.geo.bayesx.R R2BayesX/R/get.unique.R R2BayesX/R/bayesx.construct.nigmix.smooth.spec.R R2BayesX/R/print.summary.bayesx.R R2BayesX/R/make_by.R R2BayesX/R/coef.bayesx.R R2BayesX/R/rmf.R R2BayesX/R/read.bayesx.output.R R2BayesX/R/s4hm.R R2BayesX/R/neffects.R R2BayesX/R/print.bayesx.R R2BayesX/R/confint.bayesx.R R2BayesX/R/resplit.R R2BayesX/R/bayesx.construct.offset.smooth.spec.R R2BayesX/R/Predict.matrix.nu.smooth.R R2BayesX/R/plotmap.R R2BayesX/R/bayesx_prgfile.R R2BayesX/R/get.model.R R2BayesX/R/colorlegend.R R2BayesX/R/write.bayesx.input.R R2BayesX/R/chacol.R R2BayesX/R/rrd.R R2BayesX/R/cprob.R R2BayesX/R/bayesx.construct.rw2.smooth.spec.R R2BayesX/R/plot.bnd.R R2BayesX/R/bayesx.construct.R R2BayesX/R/bayesx.construct.te.smooth.spec.R
R2BayesX/MD5
R2BayesX/DESCRIPTION
R2BayesX/man
R2BayesX/man/BeechBnd.Rd R2BayesX/man/write.gra.Rd R2BayesX/man/sliceplot.Rd R2BayesX/man/plot3d.Rd R2BayesX/man/BeechGra.Rd R2BayesX/man/nbAndGraConversion.Rd R2BayesX/man/DIC.Rd R2BayesX/man/plotblock.Rd R2BayesX/man/read.bnd.Rd R2BayesX/man/bayesx.construct.Rd R2BayesX/man/summary.bayesx.Rd R2BayesX/man/GermanyBnd.Rd R2BayesX/man/plot.bayesx.Rd R2BayesX/man/cprob.Rd R2BayesX/man/write.bayesx.input.Rd R2BayesX/man/logfile.Rd R2BayesX/man/get.neighbor.Rd R2BayesX/man/write.bnd.Rd R2BayesX/man/ZambiaNutrition.Rd R2BayesX/man/read.gra.Rd R2BayesX/man/R2BayesX-package.Rd R2BayesX/man/prgfile.Rd R2BayesX/man/bayesx.Rd R2BayesX/man/predict.bayesx.Rd R2BayesX/man/ZambiaBnd.Rd R2BayesX/man/spAndBndConversion.Rd R2BayesX/man/sx.Rd R2BayesX/man/fitted.bayesx.Rd R2BayesX/man/shp2bnd.Rd R2BayesX/man/read.bayesx.output.Rd R2BayesX/man/term.freqs.Rd R2BayesX/man/getscript.Rd R2BayesX/man/bayesx.term.options.Rd R2BayesX/man/parse.bayesx.input.Rd R2BayesX/man/samples.Rd R2BayesX/man/plotmap.Rd R2BayesX/man/GRstats.Rd R2BayesX/man/MunichBnd.Rd R2BayesX/man/delete.neighbor.Rd R2BayesX/man/add.neighbor.Rd R2BayesX/man/colorlegend.Rd R2BayesX/man/bnd2gra.Rd R2BayesX/man/GAMart.Rd R2BayesX/man/plot2d.Rd R2BayesX/man/bayesx.control.Rd R2BayesX/man/runtime.Rd R2BayesX/man/FantasyBnd.Rd R2BayesX/man/GCV.Rd R2BayesX/man/ForestHealth.Rd R2BayesX/man/plotsamples.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.