| Analysis.permutation | Computing the FDR-controlled level for the significance of... |
| as.ESS.object | Compiles the main input and output files from a previous run... |
| boxplotbeta | Draws boxplots of the posterior distribution of regression... |
| check.convergence | Diagnostic plots for the evaluation of the convergence of the... |
| data.X | Data set compiling genotype data for 29 rats. |
| data.Y.Hopx | Data set compiling gene expression levels (HOPX gene) for 29... |
| example.as.ESS.object | Function creating an 'ESS' object from the example files... |
| Extend.R2GUESS | Extends an already finished 'R2GUESS' run for an extra... |
| FDR.permutation | Performs parallel permuted runs of 'R2GUESS' and returns the... |
| get.best.models | Internal function used to read in R the result of the best... |
| get.g.sweep | Internal function used to generate the regression... |
| get.sweep.best.model | Internal function used to generate the regression... |
| MAP.file | MAP file describing genotypes from the rats experiment. |
| pairwise.correlation | Calculates and plots the pairwise correlation between... |
| plotcim | Clustered Image Maps (CIMs) (heat maps) |
| plotcim.explore | Plots a cluster image mapping of correlations between... |
| plot.ESS | Provides diagnostic plots to assess the convergence of the... |
| plotmodel | Visualisation of the proximity between best models |
| plotMPPI | Plots the marginal posterior probability of inclusion (MPPI)... |
| plotvariable | Visualisation of the best models |
| Postprocess.R2GUESS | Performs posterior inference from an interrupted 'R2GUESS'... |
| print.ESS | Provides a 'print' method for class 'ESS' |
| R2GUESS | Wrapper function that reads the input files and parameter... |
| R2GUESS-package | Sparse Bayesian variable selection method for linear... |
| R2GUESS.perm | Internal function used for the parallel computation on the... |
| Resume.R2GUESS | Function resuming an interrupted 'R2GUESS' run |
| sample.beta | Posterior distribution of the regression coefficients for a... |
| summarybest.model | Internal function used for the summary.ESS function. |
| summary.ESS | 'summary' method for class 'ESS' |
| wrapper | Internal function used for the parallel computation on the... |
