- Home
- CRAN
**R2GUESS**: Wrapper Functions for GUESS**MAP.file**: MAP file describing genotypes from the rats experiment.

# MAP file describing genotypes from the rats experiment.

### Description

This data set
contains the annotation information for the 770 SNPs used in the
example. SNPs are described in rows (in the same order as they appear
in `data.X`

), and the following information is provided:
the SNP rs name (`SNPName`

), the Chromosome it belongs to
(`Chr`

), and the physical position on the chromosome (`Posn`

)

### Format

A data frame with 770 rows and 3 columns

### See Also

`data.X`

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker. Vote for new features on Trello.

- Analysis.permutation: Computing the FDR-controlled level for the significance of...
- Analysis.permutation: Computing the FDR-controlled level for the significance of...
- as.ESS.object: Compiles the main input and output files from a previous run...
- as.ESS.object: Compiles the main input and output files from a previous run...
- boxplotbeta: Draws boxplots of the posterior distribution of regression...
- boxplotbeta: Draws boxplots of the posterior distribution of regression...
- check.convergence: Diagnostic plots for the evaluation of the convergence of the...
- check.convergence: Diagnostic plots for the evaluation of the convergence of the...
- data.X: Data set compiling genotype data for 29 rats.
- data.X: Data set compiling genotype data for 29 rats.
- data.Y.Hopx: Data set compiling gene expression levels (HOPX gene) for 29...
- example.as.ESS.object: Function creating an 'ESS' object from the example files...
- example.as.ESS.object: Function creating an 'ESS' object from the example files...
- Extend.R2GUESS: Extends an already finished 'R2GUESS' run for an extra...
- Extend.R2GUESS: Extends an already finished 'R2GUESS' run for an extra...
- FDR.permutation: Performs parallel permuted runs of 'R2GUESS' and returns the...
- FDR.permutation: Performs parallel permuted runs of 'R2GUESS' and returns the...
- get.best.models: Internal function used to read in R the result of the best...
- get.best.models: Internal function used to read in R the result of the best...
- get.g.sweep: Internal function used to generate the regression...
- get.g.sweep: Internal function used to generate the regression...
- get.sweep.best.model: Internal function used to generate the regression...
- get.sweep.best.model: Internal function used to generate the regression...
- MAP.file: MAP file describing genotypes from the rats experiment.
- MAP.file: MAP file describing genotypes from the rats experiment.
- pairwise.correlation: Calculates and plots the pairwise correlation between...
- pairwise.correlation: Calculates and plots the pairwise correlation between...
- plotcim: Clustered Image Maps (CIMs) (heat maps)
- plotcim: Clustered Image Maps (CIMs) (heat maps)
- plotcim.explore: Plots a cluster image mapping of correlations between...
- plotcim.explore: Plots a cluster image mapping of correlations between...
- plot.ESS: Provides diagnostic plots to assess the convergence of the...
- plot.ESS: Provides diagnostic plots to assess the convergence of the...
- plotmodel: Visualisation of the proximity between best models
- plotmodel: Visualisation of the proximity between best models
- plotMPPI: Plots the marginal posterior probability of inclusion (MPPI)...
- plotMPPI: Plots the marginal posterior probability of inclusion (MPPI)...
- plotvariable: Visualisation of the best models
- plotvariable: Visualisation of the best models
- Postprocess.R2GUESS: Performs posterior inference from an interrupted 'R2GUESS'...
- Postprocess.R2GUESS: Performs posterior inference from an interrupted 'R2GUESS'...
- print.ESS: Provides a 'print' method for class 'ESS'
- print.ESS: Provides a 'print' method for class 'ESS'
- R2GUESS: Wrapper function that reads the input files and parameter...
- R2GUESS: Wrapper function that reads the input files and parameter...
- R2GUESS-package: Sparse Bayesian variable selection method for linear...
- R2GUESS-package: Sparse Bayesian variable selection method for linear...
- R2GUESS.perm: Internal function used for the parallel computation on the...
- R2GUESS.perm: Internal function used for the parallel computation on the...
- Resume.R2GUESS: Function resuming an interrupted 'R2GUESS' run
- Resume.R2GUESS: Function resuming an interrupted 'R2GUESS' run
- sample.beta: Posterior distribution of the regression coefficients for a...
- sample.beta: Posterior distribution of the regression coefficients for a...
- summarybest.model: Internal function used for the summary.ESS function.
- summarybest.model: Internal function used for the summary.ESS function.
- summary.ESS: 'summary' method for class 'ESS'
- summary.ESS: 'summary' method for class 'ESS'
- wrapper: Internal function used for the parallel computation on the...
- wrapper: Internal function used for the parallel computation on the...