Man pages for R2GUESS
Wrapper Functions for GUESS

Analysis.permutationComputing the FDR-controlled level for the significance of...
as.ESS.objectCompiles the main input and output files from a previous run...
boxplotbetaDraws boxplots of the posterior distribution of regression...
check.convergenceDiagnostic plots for the evaluation of the convergence of the...
data.XData set compiling genotype data for 29 rats.
data.Y.HopxData set compiling gene expression levels (HOPX gene) for 29...
example.as.ESS.objectFunction creating an 'ESS' object from the example files...
Extend.R2GUESSExtends an already finished 'R2GUESS' run for an extra...
FDR.permutationPerforms parallel permuted runs of 'R2GUESS' and returns the...
get.best.modelsInternal function used to read in R the result of the best...
get.g.sweepInternal function used to generate the regression...
get.sweep.best.modelInternal function used to generate the regression...
MAP.fileMAP file describing genotypes from the rats experiment.
pairwise.correlationCalculates and plots the pairwise correlation between...
plotcimClustered Image Maps (CIMs) (heat maps)
plotcim.explorePlots a cluster image mapping of correlations between...
plot.ESSProvides diagnostic plots to assess the convergence of the...
plotmodelVisualisation of the proximity between best models
plotMPPIPlots the marginal posterior probability of inclusion (MPPI)...
plotvariableVisualisation of the best models
Postprocess.R2GUESSPerforms posterior inference from an interrupted 'R2GUESS'...
print.ESSProvides a 'print' method for class 'ESS'
R2GUESSWrapper function that reads the input files and parameter...
R2GUESS-packageSparse Bayesian variable selection method for linear...
R2GUESS.permInternal function used for the parallel computation on the...
Resume.R2GUESSFunction resuming an interrupted 'R2GUESS' run
sample.betaPosterior distribution of the regression coefficients for a...
summarybest.modelInternal function used for the summary.ESS function.
summary.ESS'summary' method for class 'ESS'
wrapperInternal function used for the parallel computation on the...
R2GUESS documentation built on May 30, 2017, 7:18 a.m.