R2OpenBUGS: Running OpenBUGS from R

Share:

Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R.

Author
originally written as R2WinBUGS by Andrew Gelman <gelman@stat.columbia.edu>; changes and packaged by Sibylle Sturtz <sturtz@statistik.tu-dortmund.de> and Uwe Ligges <ligges@statistik.tu-dortmund.de>. With considerable contributions by Gregor Gorjanc <gregor.gorjanc@bfro.uni-lj.si> and Jouni Kerman <kerman@stat.columbia.edu>. Adapted to R2OpenBUGS from R2WinBUGS by Neal Thomas.
Date of publication
2015-04-07 19:16:49
Maintainer
Neal Thomas <snthomas99@yahoo.com>
License
GPL-2
Version
3.2-3.1

View on CRAN

Man pages

as.bugs.array
Convert to bugs object
attach.all
Attach / detach elements of (bugs) objects to search path
bugs
Run OpenBUGS from R
bugs.data
Writing input for OpenBUGS
bugs.inits
Writing input for OpenBUGS
bugs.log
Read data from OpenBUGS logfile
bugs.plot
Plotting summary information - intended for internal use only
bugs.run
Calling OpenBUGS
bugs.script
Writes script for running OpenBUGS
bugs.sims
OpenBUGS output reader
bugs.update.settings
Adjusting OpenBUGS registry
decode.parameter.name
Decodes OpenBUGS parameter names
monitor
Special summary statistics
plot.bugs
Plotting a bugs object
print.bugs
Printing a bugs object
R2WinBUGS-package
Running OpenBUGS from R
read.bugs
Read output files in CODA format
schools
8 schools analysis
validateInstallOpenBUGS
Compare OpenBUGS/R2OpenBUGS execution to results supplied...
write.datafile
Write data for OpenBUGS
write.model
Creating a OpenBUGS model file

Files in this package

R2OpenBUGS
R2OpenBUGS/inst
R2OpenBUGS/inst/CITATION
R2OpenBUGS/inst/NEWS
R2OpenBUGS/inst/validateInstallOpenBUGS
R2OpenBUGS/inst/validateInstallOpenBUGS/Ratsinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Dyesdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/validOpenBUGSResults.R
R2OpenBUGS/inst/validateInstallOpenBUGS/Linedata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Stacksdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Cameldata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Airinits1.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Surgicalinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Stacksinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Airinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Dugongsdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Surgicaldata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Equivdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Equivmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Asiainits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Dugongsinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Dyesinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Airdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/BiRatsinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Asiadata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Camelinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Surgicalrandmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Airmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Surgicalranddata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Beetlesinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Beetlesmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Surgicalmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Ratsmissdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Surgicalrandinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Linemodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Stacksmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Asiamodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Dyesmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/BiRatsdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Eyesmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Ratsdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/OtreesMVNdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/OtreesMVNinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Camelmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/BiRatsmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Lineinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Eyesinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Ratsmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Dugongsmodel.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Beetlesdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Eyesdata.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/Equivinits.txt
R2OpenBUGS/inst/validateInstallOpenBUGS/OtreesMVNmodel.txt
R2OpenBUGS/inst/model
R2OpenBUGS/inst/model/schools.txt
R2OpenBUGS/inst/doc
R2OpenBUGS/inst/doc/R2OpenBUGS.Rnw
R2OpenBUGS/inst/doc/R2OpenBUGS.pdf
R2OpenBUGS/NAMESPACE
R2OpenBUGS/data
R2OpenBUGS/data/schools.txt.gz
R2OpenBUGS/R
R2OpenBUGS/R/bugs.update.settings.R
R2OpenBUGS/R/monitor.R
R2OpenBUGS/R/bugs.R
R2OpenBUGS/R/attach.all.R
R2OpenBUGS/R/findOpenBUGS.R
R2OpenBUGS/R/bugs.sims.R
R2OpenBUGS/R/bugs.plot.inferences.R
R2OpenBUGS/R/read.bugs.R
R2OpenBUGS/R/bugs.log.R
R2OpenBUGS/R/bugs.data.R
R2OpenBUGS/R/bugs.script.R
R2OpenBUGS/R/formatdata.R
R2OpenBUGS/R/write.model.R
R2OpenBUGS/R/as.bugs.array.R
R2OpenBUGS/R/conv.par.R
R2OpenBUGS/R/print.bugs.R
R2OpenBUGS/R/write.datafile.R
R2OpenBUGS/R/decode.parameter.name.R
R2OpenBUGS/R/as.mcmc.list.bugs.R
R2OpenBUGS/R/wineutils.R
R2OpenBUGS/R/bugs.inits.R
R2OpenBUGS/R/bugs.run.R
R2OpenBUGS/R/validateInstallOpenBUGS.R
R2OpenBUGS/R/plot.bugs.R
R2OpenBUGS/R/bugs.plot.summary.R
R2OpenBUGS/vignettes
R2OpenBUGS/vignettes/literatur.bst
R2OpenBUGS/vignettes/Z.cls
R2OpenBUGS/vignettes/countssw.pdf
R2OpenBUGS/vignettes/plot.pdf
R2OpenBUGS/vignettes/benzolsw.pdf
R2OpenBUGS/vignettes/R2OpenBUGS.Rnw
R2OpenBUGS/vignettes/literatur.bib
R2OpenBUGS/vignettes/expectedsw.pdf
R2OpenBUGS/vignettes/bugs.tex
R2OpenBUGS/vignettes/RdRW.sty
R2OpenBUGS/MD5
R2OpenBUGS/build
R2OpenBUGS/build/vignette.rds
R2OpenBUGS/DESCRIPTION
R2OpenBUGS/man
R2OpenBUGS/man/bugs.update.settings.Rd
R2OpenBUGS/man/bugs.inits.Rd
R2OpenBUGS/man/attach.all.Rd
R2OpenBUGS/man/bugs.run.Rd
R2OpenBUGS/man/monitor.Rd
R2OpenBUGS/man/read.bugs.Rd
R2OpenBUGS/man/bugs.sims.Rd
R2OpenBUGS/man/bugs.plot.Rd
R2OpenBUGS/man/print.bugs.Rd
R2OpenBUGS/man/schools.Rd
R2OpenBUGS/man/as.bugs.array.Rd
R2OpenBUGS/man/bugs.data.Rd
R2OpenBUGS/man/plot.bugs.Rd
R2OpenBUGS/man/R2WinBUGS-package.Rd
R2OpenBUGS/man/validateInstallOpenBUGS.Rd
R2OpenBUGS/man/bugs.script.Rd
R2OpenBUGS/man/write.datafile.Rd
R2OpenBUGS/man/write.model.Rd
R2OpenBUGS/man/bugs.log.Rd
R2OpenBUGS/man/decode.parameter.name.Rd
R2OpenBUGS/man/bugs.Rd