R2OpenBUGS: Running OpenBUGS from R
Version 3.2-3.2

Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R.

Browse man pages Browse package API and functions Browse package files

Authororiginally written as R2WinBUGS by Andrew Gelman <gelman@stat.columbia.edu>; changes and packaged by Sibylle Sturtz <sturtz@statistik.tu-dortmund.de> and Uwe Ligges <ligges@statistik.tu-dortmund.de>. With considerable contributions by Gregor Gorjanc <gregor.gorjanc@bfro.uni-lj.si> and Jouni Kerman <kerman@stat.columbia.edu>. Adapted to R2OpenBUGS from R2WinBUGS by Neal Thomas.
Date of publication2017-02-22 08:42:15
MaintainerNeal Thomas <snthomas99@gmail.com>
LicenseGPL-2
Version3.2-3.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("R2OpenBUGS")

Man pages

as.bugs.array: Convert to bugs object
attach.all: Attach / detach elements of (bugs) objects to search path
bugs: Run OpenBUGS from R
bugs.data: Writing input for OpenBUGS
bugs.inits: Writing input for OpenBUGS
bugs.log: Read data from OpenBUGS logfile
bugs.plot: Plotting summary information - intended for internal use only
bugs.run: Calling OpenBUGS
bugs.script: Writes script for running OpenBUGS
bugs.sims: OpenBUGS output reader
bugs.update.settings: Adjusting OpenBUGS registry
decode.parameter.name: Decodes OpenBUGS parameter names
monitor: Special summary statistics
plot.bugs: Plotting a bugs object
print.bugs: Printing a bugs object
R2WinBUGS-package: Running OpenBUGS from R
read.bugs: Read output files in CODA format
schools: 8 schools analysis
validateInstallOpenBUGS: Compare OpenBUGS/R2OpenBUGS execution to results supplied...
write.datafile: Write data for OpenBUGS
write.model: Creating a OpenBUGS model file

Functions

R2OpenBUGS Man page
R2OpenBUGS-package Man page
as.bugs.array Man page Source code
as.mcmc.list.bugs Source code
attach.all Man page Source code
attach.bugs Man page Source code
bugs Man page
bugs.data Man page
bugs.inits Man page
bugs.log Man page Source code
bugs.plot.inferences Man page
bugs.plot.summary Man page
bugs.run Man page
bugs.script Man page
bugs.sims Man page
bugs.update.settings Man page
conv.par Man page
decode.parameter.name Man page
detach.all Man page Source code
detach.bugs Man page Source code
findOpenBUGS Source code
findUnixBinary Source code
formatdata Man page
fround Source code
monitor Man page
native2win Source code
plot.bugs Man page Source code
print.bugs Man page Source code
read.bugs Man page Source code
replaceScientificNotationR Source code
schools Man page
validateInstallOpenBUGS Man page Source code
win2native Source code
winedriveMap Source code
winedriveRTr Source code
winedriveTr Source code
write.datafile Man page
write.model Man page Source code

Files

inst
inst/CITATION
inst/NEWS
inst/validateInstallOpenBUGS
inst/validateInstallOpenBUGS/Ratsinits.txt
inst/validateInstallOpenBUGS/Dyesdata.txt
inst/validateInstallOpenBUGS/validOpenBUGSResults.R
inst/validateInstallOpenBUGS/Linedata.txt
inst/validateInstallOpenBUGS/Stacksdata.txt
inst/validateInstallOpenBUGS/Cameldata.txt
inst/validateInstallOpenBUGS/Airinits1.txt
inst/validateInstallOpenBUGS/Surgicalinits.txt
inst/validateInstallOpenBUGS/Stacksinits.txt
inst/validateInstallOpenBUGS/Airinits.txt
inst/validateInstallOpenBUGS/Dugongsdata.txt
inst/validateInstallOpenBUGS/Surgicaldata.txt
inst/validateInstallOpenBUGS/Equivdata.txt
inst/validateInstallOpenBUGS/Equivmodel.txt
inst/validateInstallOpenBUGS/Asiainits.txt
inst/validateInstallOpenBUGS/Dugongsinits.txt
inst/validateInstallOpenBUGS/Dyesinits.txt
inst/validateInstallOpenBUGS/Airdata.txt
inst/validateInstallOpenBUGS/BiRatsinits.txt
inst/validateInstallOpenBUGS/Asiadata.txt
inst/validateInstallOpenBUGS/Camelinits.txt
inst/validateInstallOpenBUGS/Surgicalrandmodel.txt
inst/validateInstallOpenBUGS/Airmodel.txt
inst/validateInstallOpenBUGS/Surgicalranddata.txt
inst/validateInstallOpenBUGS/Beetlesinits.txt
inst/validateInstallOpenBUGS/Beetlesmodel.txt
inst/validateInstallOpenBUGS/Surgicalmodel.txt
inst/validateInstallOpenBUGS/Ratsmissdata.txt
inst/validateInstallOpenBUGS/Surgicalrandinits.txt
inst/validateInstallOpenBUGS/Linemodel.txt
inst/validateInstallOpenBUGS/Stacksmodel.txt
inst/validateInstallOpenBUGS/Asiamodel.txt
inst/validateInstallOpenBUGS/Dyesmodel.txt
inst/validateInstallOpenBUGS/BiRatsdata.txt
inst/validateInstallOpenBUGS/Eyesmodel.txt
inst/validateInstallOpenBUGS/Ratsdata.txt
inst/validateInstallOpenBUGS/OtreesMVNdata.txt
inst/validateInstallOpenBUGS/OtreesMVNinits.txt
inst/validateInstallOpenBUGS/Camelmodel.txt
inst/validateInstallOpenBUGS/BiRatsmodel.txt
inst/validateInstallOpenBUGS/Lineinits.txt
inst/validateInstallOpenBUGS/Eyesinits.txt
inst/validateInstallOpenBUGS/Ratsmodel.txt
inst/validateInstallOpenBUGS/Dugongsmodel.txt
inst/validateInstallOpenBUGS/Beetlesdata.txt
inst/validateInstallOpenBUGS/Eyesdata.txt
inst/validateInstallOpenBUGS/Equivinits.txt
inst/validateInstallOpenBUGS/OtreesMVNmodel.txt
inst/model
inst/model/schools.txt
inst/doc
inst/doc/R2OpenBUGS.Rnw
inst/doc/R2OpenBUGS.pdf
NAMESPACE
data
data/schools.txt
R
R/bugs.update.settings.R
R/monitor.R
R/bugs.R
R/attach.all.R
R/findOpenBUGS.R
R/bugs.sims.R
R/bugs.plot.inferences.R
R/read.bugs.R
R/bugs.log.R
R/bugs.data.R
R/bugs.script.R
R/formatdata.R
R/write.model.R
R/as.bugs.array.R
R/conv.par.R
R/print.bugs.R
R/write.datafile.R
R/decode.parameter.name.R
R/as.mcmc.list.bugs.R
R/wineutils.R
R/bugs.inits.R
R/bugs.run.R
R/validateInstallOpenBUGS.R
R/plot.bugs.R
R/bugs.plot.summary.R
vignettes
vignettes/literatur.bst
vignettes/Z.cls
vignettes/countssw.pdf
vignettes/plot.pdf
vignettes/benzolsw.pdf
vignettes/R2OpenBUGS.Rnw
vignettes/literatur.bib
vignettes/expectedsw.pdf
vignettes/bugs.tex
vignettes/RdRW.sty
MD5
build
build/vignette.rds
DESCRIPTION
man
man/bugs.update.settings.Rd
man/bugs.inits.Rd
man/attach.all.Rd
man/bugs.run.Rd
man/monitor.Rd
man/read.bugs.Rd
man/bugs.sims.Rd
man/bugs.plot.Rd
man/print.bugs.Rd
man/schools.Rd
man/as.bugs.array.Rd
man/bugs.data.Rd
man/plot.bugs.Rd
man/R2WinBUGS-package.Rd
man/validateInstallOpenBUGS.Rd
man/bugs.script.Rd
man/write.datafile.Rd
man/write.model.Rd
man/bugs.log.Rd
man/decode.parameter.name.Rd
man/bugs.Rd
R2OpenBUGS documentation built on May 29, 2017, 11:36 a.m.