bugs.script: Writes script for running OpenBUGS
In R2OpenBUGS: Running OpenBUGS from R

Description Usage Arguments Value See Also

Write file ‘script.txt’ for OpenBUGS to read - intended for internal use

bugs.script(parameters.to.save, n.chains, n.iter, n.burnin,
           n.thin, saveExec, restart, model.file.bug,
           model.file, debug=FALSE, is.inits, 
           DIC=FALSE, useWINE=FALSE,
           newWINE=TRUE, WINEPATH=NULL, bugs.seed=NULL, summary.only=FALSE,
           save.history=(.Platform$OS.type == "windows" | useWINE==TRUE),
           bugs.data.file, bugs.inits.files,
           over.relax = FALSE)

`parameters.to.save`	parameters that should be monitored
`n.chains`	number of Markov chains
`n.iter`	number of total iterations (including burn in)
`n.burnin`	length of burn in
`n.thin`	thinning parameter
`saveExec`	If TRUE, a re-startable image of the OpenBUGS execution is saved with `basename(model.file)` and extension .bug in the working directory, which must be specified. The .bug files can be large, so users should monitor them carefully and remove them when not needed.
`restart`	If TRUE, execution resumes with the final status from the previous execution stored in the .bug file in the working directory. If `n.burnin=0`,additional iterations are performed and all iterations since the previous burnin are used (including those from past executions). If `n.burnin>0`, a new burnin is performed, and the previous iterations are discarded, but execution continues from the status at the end of the previous execution. When `restart=TRUE`, only `n.burnin`, `n.iter`, and `saveExec` inputs should be changed from the call creating the .bug file, otherwise failed or erratic results may be produced.
`model.file.bug`	If saveExec or restart is TRUE, then `model.file.bug` receives/contains the OpenBUGS program image for restarting the program. `model.file.bug` is the name of the file with its full path
`model.file`	file containing the model written in OpenBUGS code
`debug`	if `FALSE`, OpenBUGS is closed automatically, otherwise OpenBUGS remains open for further investigation. With `debug` = `TRUE`, no modelQuit() command is added to the end of the script, which can cause an infinite loop with linux execution.
`is.inits`	logical; whether initial values are given by the user (`TRUE`) or have to be generated by OpenBUGS
`DIC`	logical; if `TRUE`, compute deviance, pD, and DIC automatically in OpenBUGS
`useWINE`	as in `bugs` meta function
`newWINE`	as in `bugs` meta function
`WINEPATH`	as in `bugs` meta function
`bugs.seed`	random seed for OpenBUGS (default is no seed specified)
`summary.only`	If `TRUE`, only a parameter summary for very quick analyses is given, temporary created files are not removed in that case.
`save.history`	If `TRUE` (the default), trace plots are generated at the end.
`bugs.data.file`	character name of the data file
`bugs.inits.files`	character vector of names of the inits files
`over.relax`	If `TRUE`, over-relaxed form of MCMC is used if available from OpenBUGS.