annotation.summary: annotation.summary()

In RAMClustR: Mass Spectrometry Metabolomics Feature Clustering and Interpretation

annotation.summary()

Description

Write a .csv file containing a summary of the annotations in the ramclustR object.

Usage

annotation.summary(ramclustObj = NULL, outfile = NULL)

Arguments

ramclustObj	R object - the ramclustR object which was used to write the .mat or .msp files
outfile	file path/name of output csv summary file. if NULL (default) will be exported to spectra/annotaionSummary.csv

Details

this function exports a csv file summarizing annotation evidence for each compound

Value

nothing

Author(s)

Corey Broeckling

References

Broeckling CD, Afsar FA, Neumann S, Ben-Hur A, Prenni JE. RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data. Anal Chem. 2014 Jul 15;86(14):6812-7. doi: 10.1021/ac501530d. Epub 2014 Jun 26. PubMed PMID: 24927477.

RAMClustR documentation built on Oct. 20, 2023, 5:08 p.m.