checks: checks

In RAMClustR: Mass Spectrometry Metabolomics Feature Clustering and Interpretation

checks

Description

check if MS data contains mz and rt, and if MSMS data is present feature names and sample names are identical

Usage

checks(
  ms1_featureDefinitions = NULL,
  ms1_featureValues = NULL,
  ms2_featureValues = NULL,
  feature_names = NULL
)

Arguments

ms1_featureDefinitions	dataframe with metadata with columns: mz, rt, feature names containing MS data
ms1_featureValues	dataframe with rownames = sample names, colnames = feature names containing MS data
ms2_featureValues	dataframe with rownames = sample names, colnames = feature names containing MSMS data
feature_names	feature names extracted from the data

RAMClustR documentation built on Oct. 20, 2023, 5:08 p.m.