RCNA_object-class: RCNA.object definition

In RCNA: Robust Copy Number Alteration Detection (RCNA)

RCNA.object definition

Description

An S4 class used to specify parameters for an analysis run

Slots

sample.names

Required. Character vector containing names of subjects

ano.file

Required. Character single file path detailing a feature-wise annotation file

out.dir

Required. Character vector containing the name of each subject?s output directory

gcParams

Data Frame storing all run parameters for the correct_gc_bias function

nkrParams

Data Frame storing all run parameters for the estimate_nkr function

scoreParams

Data Frame storing all run parameters for the estimate_feature_score function

commands

RCNA_analysis object storing commands and parameters from previous function runs on this object

See Also

run_RCNA RCNA_analysis,

RCNA documentation built on April 3, 2025, 6:03 p.m.