Global functions | |
---|---|
.SPIAMod | Source code |
.checkURLAvailable | Source code |
.downloadGEOObject | Source code |
.downloadSamples | Source code |
.extractPairInfo | Source code |
.getGEOSuppFiles | Source code |
.getGOTermNames | Source code |
.getGOTerms | Source code |
.getIDMappingAnnotation | Source code |
.getKEGGGeneSets | Source code |
.getKEGGPathwayNames | Source code |
.mapIDs | Source code |
.requirePackage | Source code |
.runAddCLT | Source code |
.runCePaORA | Source code |
.runFisher | Source code Source code |
.runGeoMean | Source code |
.runLimma | Source code |
.runORA | Source code |
.runSPIA | Source code |
.runStouffer | Source code |
.runWeightedMean | Source code |
downloadGEO | Man page Source code |
getCePaPathwayCatalogue | Man page Source code |
getCommonDEGenes | Man page Source code |
getCommonPathways | Man page Source code |
getEntrezAnnotation | Man page Source code |
getGeneSets | Man page Source code |
getSPIAKEGGNetwork | Man page Source code |
getSupportedPlatforms | Man page Source code |
graphNELtoJSON.string | Source code |
loadData | Man page Source code |
plotBarChart | Man page Source code |
plotDEGeneHeatmap | Man page Source code |
plotForest | Man page Source code |
plotKEGGMap | Man page Source code |
plotMA | Man page Source code |
plotPathwayHeatmap | Man page Source code |
plotPathwayNetwork | Man page Source code |
plotVennDE | Man page Source code |
plotVennPathway | Man page Source code |
plotVolcanoDE | Man page Source code |
plotVolcanoPathway | Man page Source code |
processAffymetrix | Man page Source code |
processAgilent | Man page Source code |
runConsensusAnalysis | Man page Source code |
runDEAnalysis | Man page |
runDEMetaAnalysis | Man page Source code |
runGeneSetAnalysis | Man page |
runPathwayAnalysis | Man page |
runPathwayMetaAnalysis | Man page Source code |
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