getCePaPathwayCatalogue: Get KEGG pathway catalogue (network) for CePa.ORA and...

View source: R/CePa-helper.R

getCePaPathwayCatalogueR Documentation

Get KEGG pathway catalogue (network) for CePa.ORA and CePa.GSA methods

Description

Get KEGG pathway catalogue for CePa.ORA and CePa.GSA methods

Usage

getCePaPathwayCatalogue(org = "hsa", updateCache = FALSE)

Arguments

org

The organism abbreviation. E.g, hsa, mmu, dme, etc. To see the full list of supported organisms, visit https://www.genome.jp/kegg/catalog/org_list.html.

updateCache

A parameter to enable/disable cache update.

Value

A named list with three elements: network, names and sizes for CePa.ORA and CePa.GSA methods.

Examples


cepaNetwork <- getCePaPathwayCatalogue("hsa")


RCPA documentation built on July 3, 2024, 5:08 p.m.