getCePaPathwayCatalogue: Get KEGG pathway catalogue (network) for CePa.ORA and...
In RCPA: Consensus Pathway Analysis
getCePaPathwayCatalogue R Documentation
Get KEGG pathway catalogue (network) for CePa.ORA and CePa.GSA methods
Description
Get KEGG pathway catalogue for CePa.ORA and CePa.GSA methods
Usage
getCePaPathwayCatalogue(org = "hsa", updateCache = FALSE)
Arguments
org
The organism abbreviation. E.g, hsa, mmu, dme, etc.
To see the full list of supported organisms, visit https://www.genome.jp/kegg/catalog/org_list.html.
updateCache
A parameter to enable/disable cache update.
Value
A named list with three elements: network, names and sizes for CePa.ORA and CePa.GSA methods.
Examples
cepaNetwork <- getCePaPathwayCatalogue("hsa")
RCPA documentation built on Nov. 21, 2023, 5:08 p.m.
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| getCePaPathwayCatalogue | R Documentation |
Get KEGG pathway catalogue (network) for CePa.ORA and CePa.GSA methods
Description
Get KEGG pathway catalogue for CePa.ORA and CePa.GSA methods
Usage
getCePaPathwayCatalogue(org = "hsa", updateCache = FALSE)
Arguments
org |
The organism abbreviation. E.g, hsa, mmu, dme, etc. To see the full list of supported organisms, visit https://www.genome.jp/kegg/catalog/org_list.html. |
updateCache |
A parameter to enable/disable cache update. |
Value
A named list with three elements: network, names and sizes for CePa.ORA and CePa.GSA methods.
Examples
cepaNetwork <- getCePaPathwayCatalogue("hsa")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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