Files in RCPA
Consensus Pathway Analysis
MD5
NAMESPACE
DESCRIPTION
R/SPIA-helper.R
R/genesets.R
R/plot-KEGG-map.R
R/CePa-helper.R
R/plot-pathway-heatmap.R
R/plot-pathway-network.R
R/common-sigPath.R
R/plot-venn.R
R/plot-volcano.R
R/geneset-analysis.R
R/consensus-analysis.R
R/global.R
R/plot-pathway-bar-chart.R
R/GEO-download.R
R/plot-forest.R
R/meta-analysis.R
R/annotation.R
R/pathway-analysis.R
R/plot-MA.R
R/DE-analysis.R
R/common-de.R
R/plot-gene-heatmap.R
R/utils.R
R/ID-mapping.R
inst/doc/RCPA.Rmd
inst/doc/RCPA.html
inst/doc/RCPA.R
inst/extdata/pieStyle.js
inst/extdata/cytoscape_template.html
build/vignette.rds
vignettes/RCPA.Rmd
vignettes/ref.bib
vignettes/ieee.csl
vignettes/images/venn-de.png
vignettes/images/keggmap.png
vignettes/images/venn-pe.png
vignettes/images/pHeatmap.png
vignettes/images/gHeatmap.png
vignettes/images/pNetwork.png
vignettes/images/forestplot.png
vignettes/images/ma-de.png
vignettes/images/volcano-de.png
vignettes/images/volcano-pe.png
vignettes/images/barchart.png
man/plotBarChart.Rd
man/getCommonPathways.Rd
man/runConsensusAnalysis.Rd
man/getCommonDEGenes.Rd
man/plotKEGGMap.Rd
man/plotVolcanoDE.Rd
man/getCePaPathwayCatalogue.Rd
man/processAgilent.Rd
man/getSPIAKEGGNetwork.Rd
man/loadData.Rd
man/runDEAnalysis.Rd
man/plotPathwayNetwork.Rd
man/getSupportedPlatforms.Rd
man/plotMA.Rd
man/plotDEGeneHeatmap.Rd
man/plotForest.Rd
man/runDEMetaAnalysis.Rd
man/plotPathwayHeatmap.Rd
man/getEntrezAnnotation.Rd
man/downloadGEO.Rd
man/plotVolcanoPathway.Rd
man/plotVennPathway.Rd
man/getGeneSets.Rd
man/processAffymetrix.Rd
man/plotVennDE.Rd
man/runPathwayMetaAnalysis.Rd
man/runPathwayAnalysis.Rd
man/runGeneSetAnalysis.Rd
