RCPmod: Regions of Common Profiles Modelling with Mixtures-of-Experts

Identifies regions of common (species) profiles (RCPs), possibly when sampling artefacts are present. Within a region the probability of sampling all species remains approximately constant. This is performed using mixtures-of-experts models. The package also contains associated methods, such as diagnostics.

Author
Scott D. Foster
Date of publication
2016-09-22 16:50:46
Maintainer
Scott Foster <scott.foster@csiro.au>
License
GPL (>= 2)
Version
2.154

View on CRAN

Man pages

AIC.regimix
Information criterion for a regimix model.
coef.regimix
A regimix objects coefficients.
cooks.distance.regimix
Calculates leave-some-out statistics for a regimix object,...
extractAIC.regimix
Extracts the AIC for a regimix model.
logLik.regimix
The log likelihood for a regimix model.
orderFitted
Assesses classification error and re-orders parameters for...
plot.regimix
Plots residuals from a regimix x.
plot.registab
Diagnostic plotting to see if RCP groups are stable
predict.regimix
Predicts from a regimix object.
print.regimix
Prints a regimix object.
regiboot
Bootstraps a regimix object.
regimix
Fits a regimix model.
residuals.regimix
Residuals for a regimix object.
simRCPdata
Simulates from a regimix model
stability.regimix
Diagnostic checks to see if RCP groups are stable
summary.regimix
Summarises a regimix object.
vcov.regimix
Variance matrix for a regimix object.

Files in this package

RCPmod
RCPmod/inst
RCPmod/inst/CITATION
RCPmod/src
RCPmod/src/myDerivs4.cc
RCPmod/src/rcp4.h
RCPmod/src/myParms4.cc
RCPmod/src/myOptCont4.cc
RCPmod/src/rcp4.cc
RCPmod/src/rcpPred4.h
RCPmod/src/myData4.cc
RCPmod/src/rcpPred4.cc
RCPmod/src/allClasses4.cc
RCPmod/src/myFits4.cc
RCPmod/src/Tweedie.h
RCPmod/src/Tweedie.cc
RCPmod/src/TweedieDeriv.cc
RCPmod/NAMESPACE
RCPmod/R
RCPmod/R/RCPmod.R
RCPmod/R/sysdata.rda
RCPmod/MD5
RCPmod/DESCRIPTION
RCPmod/man
RCPmod/man/AIC.regimix.Rd
RCPmod/man/orderFitted.Rd
RCPmod/man/simRCPdata.Rd
RCPmod/man/plot.regimix.Rd
RCPmod/man/print.regimix.Rd
RCPmod/man/summary.regimix.Rd
RCPmod/man/residuals.regimix.Rd
RCPmod/man/regimix.Rd
RCPmod/man/extractAIC.regimix.Rd
RCPmod/man/regiboot.Rd
RCPmod/man/plot.registab.Rd
RCPmod/man/stability.regimix.Rd
RCPmod/man/vcov.regimix.Rd
RCPmod/man/logLik.regimix.Rd
RCPmod/man/predict.regimix.Rd
RCPmod/man/cooks.distance.regimix.Rd
RCPmod/man/coef.regimix.Rd
RCPmod/INDEX