Man pages for RCSL
Rank Constrained Similarity Learning for Single Cell RNA Sequencing Data
| ann | Cell type annotations of 'yan' datasets by Yan et al. |
| BDSM | Calculate the bolock-diagnal matrix B min_B>=0, B*1=1, F'*F=I... |
| EProjSimplexdiag | Solve the problem: min 1/2*x'*L*x-x'*d s.t. x>=0, 1'x=1 |
| EstClusters | Estimate the optimal number of clusters C for clustering |
| EucDist | Solve the problem: ||A-B||^2 = ||A||^2 + ||B||^2 - 2*A'*B |
| GenesFilter | Perform the step of gene filtering to normalizaed gene... |
| getLineage | Infer the development lineage based on the clustering results... |
| NeigRepresent | Calculate the neighbor representation of cells to the... |
| PlotMST | Plot the visualization of constructed Minimum Spanning Tree... |
| PlotPseudoTime | Infer the pseudo-temporal ordering between the cell types... |
| PlotTrajectory | Infer the developmental trajectories based on the clustering... |
| RCSL | Perform the RCSL program |
| SimS | Calculate the initial similarity matrix |
| TrajectoryAnalysis | Trajectory analysis |
| yan | A public scRNA-seq dataset by Yan et al. |
