Description Usage Arguments Value Examples

View source: R/MainFunctions.R

Calculate the initial similarity matrix

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`data` |
gene expression matrix after genes filtering |

`pcRatio` |
the ratio between the variance of the |

`gamma` |
the ratio of the global simialrity |

`NN.method` |
the method of finding neighbors |

`Dis.method` |
the distance metric in finding neighbors |

`LSH.TreeNum` |
the tree number of LSH |

`LSH.Dim` |
the dimension in LSH |

`LSH.Dis` |
the distance metric in LSH |

`neiRatio` |
ratio of the number of selected |

initial similarity matrix S

gene expression matrix after PCA processing drData

1 2 3 4 | ```
gfData <- GenesFilter(yan[1:100,1:15])
res_Sims <- SimS(gfData)
res_Sims$S
res_Sims$res_pca
``` |

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