tests/test-export.R

In REDCapExporter: Automated Construction of R Data Packages from REDCap Projects

library(REDCapExporter)

# Tests rely on publicly available REDCap and tokens published
# https://github.com/redcap-tools/redcap-test-datasets/tree/master

# project_name  token                             server_url                          pid  server         read_only  operational  notes
# archer        9A81268476645C4E5F03428B8AC3AA7B  https://bbmc.ouhsc.edu/redcap/api/  153  oklahoma-bbmc  TRUE       TRUE         simple structure; read-only
# archer        D70F9ACD1EDD6F151C6EA78683944E98  https://bbmc.ouhsc.edu/redcap/api/  213  oklahoma-bbmc  FALSE      TRUE         simple structure; read & write
# archer        0434F0E9CF53ED0587847AB6E51DE762  https://bbmc.ouhsc.edu/redcap/api/  212  oklahoma-bbmc  TRUE       TRUE         longitudinal structure; read-only
# archer        D72C6485B52FE9F75D27B696977FBA43  https://bbmc.ouhsc.edu/redcap/api/  268  oklahoma-bbmc  TRUE       TRUE         Russian characters; read-only

archer01_csv  <- export_core(uri = 'https://bbmc.ouhsc.edu/redcap/api/', token = '9A81268476645C4E5F03428B8AC3AA7B')

Sys.setenv("REDCap_API_URI" = 'https://bbmc.ouhsc.edu/redcap/api/')
Sys.setenv("REDCap_API_TOKEN" = '9A81268476645C4E5F03428B8AC3AA7B')
archer01_json <- export_core(format = "json")

stopifnot(
  inherits(archer01_csv, "rcer_rccore"),
  inherits(archer01_json, "rcer_rccore"),
  inherits(archer01_csv$project_raw, "rcer_raw_project"),
  inherits(archer01_json$project_raw, "rcer_raw_project"),
  inherits(archer01_csv$metadata_raw, "rcer_raw_metadata"),
  inherits(archer01_json$metadata_raw, "rcer_raw_metadata"),
  inherits(archer01_csv$project_raw, "rcer_raw_project"),
  inherits(archer01_json$project_raw, "rcer_raw_project"),
  inherits(archer01_csv$record_raw, "rcer_raw_record"),
  inherits(archer01_json$record_raw, "rcer_raw_record"),
  grepl("text/csv", attr(archer01_csv$record_raw, "Content-Type")),
  grepl("application/json", attr(archer01_json$record_raw, "Content-Type"))
)

a1 <- format_record(archer01_csv)
a2 <- format_record(archer01_json)

# apparently the end of line characters are exported differently
a1$address  <- gsub('\n', ' ', gsub('\r', '', a1$address))
a2$address  <- gsub('\n', ' ', gsub('\r', '', a2$address))
a1$comments <- gsub('\n', ' ', gsub('\r', '', a1$comments))
a2$comments <- gsub('\n', ' ', gsub('\r', '', a2$comments))

stopifnot(isTRUE(all.equal(a1, a2)))




#
#archer02 <- export_core(uri = 'https://bbmc.ouhsc.edu/redcap/api/', token = 'D70F9ACD1EDD6F151C6EA78683944E98')
#archer02 <- format_record(archer02)
#
#archer03 <- export_core(uri = 'https://bbmc.ouhsc.edu/redcap/api/', token = '0434F0E9CF53ED0587847AB6E51DE762')
#archer03 <- format_record(archer03)
#
#archer04 <- export_core(uri = 'https://bbmc.ouhsc.edu/redcap/api/', token = 'D72C6485B52FE9F75D27B696977FBA43')
#archer04 <- format_record(archer04)