SurrogateTest: Surrogate data testing

In RHRV: Heart Rate Variability Analysis of ECG Data

Surrogate data testing

Description

Surrogate data testing

Usage

SurrogateTest(
  HRVData,
  indexNonLinearAnalysis = length(HRVData$NonLinearAnalysis),
  significance = 0.05,
  oneSided = FALSE,
  alternative = c("smaller", "larger"),
  K = 1,
  useFunction,
  xlab = "Values of the statistic",
  ylab = "",
  main = "Surrogate data testing on the RR intervals",
  doPlot = TRUE,
  ...
)

Arguments

HRVData	Structure containing the RR time series.
indexNonLinearAnalysis	Reference to the data structure that will contain the nonlinear analysis
significance	Significance of the test.
oneSided	Logical value. If TRUE, the routine runs a one-side test. If FALSE, a two-side test is applied (default).
alternative	Specifies the concrete type of one-side test that should be performed: If the the user wants to test if the statistic from the original data is smaller (alternative="smaller") or larger (alternative="larger") than the expected value under the null hypothesis.
K	Integer controlling the number of surrogates to be generated (see details).
useFunction	The function that computes the discriminating statistic that shall be used for testing.
xlab	a title for the x axis.
ylab	a title for the y axis.
main	an overall title for the plot.
doPlot	Logical value. If TRUE, a graphical representation of the statistic value for both surrogates and original data is shown.
...	Additional arguments for the useFunction function.

Details

This function tests the null hypothesis (H0) stating that the series is a gaussian linear process. The test is performed by generating several surrogate data according to H0 and comparing the values of a discriminating statistic between both original data and the surrogate data. If the value of the statistic is significantly different for the original series than for the surrogate set, the null hypothesis is rejected and nonlinearity assumed.

To test with a significance level of \alpha if the statistic from the original data is smaller than the expected value under the null hypothesis (a one-side test), K/\alpha - 1 surrogates are generated. The null hypothesis is then rejected if the statistic from the data has one of the K smallest values. For a two-sided test, 2K/\alpha - 1 surrogates are generated. The null hypothesis is rejected if the statistic from the data gives one of the K smallest or largest values.

The surrogate data is generated by using a phase randomization procedure.

Value

A HRVData structure containing a SurrogateTest field storing the statistics computed for the set (surrogates.statistics field) and the RR time series (data.statistic field). The SurrogateTest list is stored under the NonLinearAnalysis structure.

References

SCHREIBER, Thomas; SCHMITZ, Andreas. Surrogate time series. Physica D: Nonlinear Phenomena, 2000, vol. 142, no 3, p. 346-382.

Examples

## Not run: 
data(HRVProcessedData)
# rename for convenience
HRVData = HRVProcessedData
# Select a small window that looks stationary
HRVData = Window(HRVData,start = 0, end=800)
HRVData = CreateNonLinearAnalysis(HRVData)
HRVData = SetVerbose(HRVData,TRUE)
HRVData = SurrogateTest(HRVData, indexNonLinearAnalysis = 1,
                        significance = 0.05, oneSided = FALSE,
                        K = 5, useFunction = timeAsymmetry2)


## End(Not run)

RHRV documentation built on Oct. 1, 2024, 1:08 a.m.