RImageJROI: Read 'ImageJ' Region of Interest (ROI) Files

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Provides functions to read 'ImageJ' (http://imagej.nih.gov/ij/) Region of Interest (ROI) files, to plot the ROIs and to convert them to 'spatstat' (http://spatstat.org/) spatial patterns.

Author
David C Sterratt [aut, cph, cre], Mikko Vihtakari [aut, cph]
Date of publication
2015-05-07 18:01:49
Maintainer
David C Sterratt <david.c.sterratt@ed.ac.uk>
License
GPL-3
Version
0.1.1
URLs

View on CRAN

Man pages

ij2spatstat
Convert 'ijroi' and 'ijzip' objects to spatstat spatial...
plot.ijroi
Plot ijroi object
plot.ijzip
Plot ijzip object
print.ijroi
Print 'ijroi' objects
read.ijroi
Read an ImageJ ROI file
read.ijzip
Read ImageJ zip file containing several ROI files
RImageJROI
Read ImageJ Region of Interest (ROI) files

Files in this package

RImageJROI
RImageJROI/inst
RImageJROI/inst/extdata
RImageJROI/inst/extdata/ijroi
RImageJROI/inst/extdata/ijroi/imagej-logo.png
RImageJROI/inst/extdata/ijroi/oval.roi
RImageJROI/inst/extdata/ijroi/polygon.roi
RImageJROI/inst/extdata/ijroi/text.roi
RImageJROI/inst/extdata/ijroi/elliptical.roi
RImageJROI/inst/extdata/ijroi/ijzip.zip
RImageJROI/inst/extdata/ijroi/freehand_line.roi
RImageJROI/inst/extdata/ijroi/multi_point.roi
RImageJROI/inst/extdata/ijroi/arrow.roi
RImageJROI/inst/extdata/ijroi/selection_brush.roi
RImageJROI/inst/extdata/ijroi/segmented_line.roi
RImageJROI/inst/extdata/ijroi/arrow-outline-doubleheaded.roi
RImageJROI/inst/extdata/ijroi/circle.roi
RImageJROI/inst/extdata/ijroi/line.roi
RImageJROI/inst/extdata/ijroi/rounded_rect.roi
RImageJROI/inst/extdata/ijroi/angle.roi
RImageJROI/inst/extdata/ijroi/freehand_selection.roi
RImageJROI/inst/extdata/ijroi/rect.roi
RImageJROI/tests
RImageJROI/tests/testthat.R
RImageJROI/tests/testthat
RImageJROI/tests/testthat/test-readroi.R
RImageJROI/NAMESPACE
RImageJROI/demo
RImageJROI/demo/00Index
RImageJROI/demo/ijroi.R
RImageJROI/NEWS
RImageJROI/R
RImageJROI/R/plot.ijroi.R
RImageJROI/R/print.ijroi.R
RImageJROI/R/ij2spatstat.R
RImageJROI/R/read.ijroi.R
RImageJROI/R/plot.ijzip.R
RImageJROI/R/read.ijzip.R
RImageJROI/R/RImageJROI-package.r
RImageJROI/MD5
RImageJROI/DESCRIPTION
RImageJROI/man
RImageJROI/man/plot.ijzip.Rd
RImageJROI/man/read.ijroi.Rd
RImageJROI/man/RImageJROI.Rd
RImageJROI/man/plot.ijroi.Rd
RImageJROI/man/read.ijzip.Rd
RImageJROI/man/print.ijroi.Rd
RImageJROI/man/ij2spatstat.Rd