RImageJROI: Read and write ImageJ Region of Interest (ROI) files

RImageJROIR Documentation

Read and write ImageJ Region of Interest (ROI) files

Description

Provides functions to read and write ImageJ (https://imagej.net/) Region of Interest (ROI) files, to plot the ROIs and to convert them as spatstat (https://spatstat.org/) spatial patterns.

Details

ImageJ ROI files can be read into R using the read.ijroi and read.ijzip functions, resulting in ijroi and ijzip objects.

The objects can be plotted using generic plot command and converted to spatstat.geom spatial patterns by using ij2spatstat function.

The ijroi and ijzip objects can be written to file using the write.ijroi and write.ijzip functions.


RImageJROI documentation built on Sept. 11, 2024, 8:09 p.m.