create.mark.mcmc: Create mcmc object for analysis with coda

In RMark: R Code for Mark Analysis

Create mcmc object for analysis with coda

Description

Reads in mcmc file from program MARK in binary and returns an mcmc object that can be used with coda functions which are most easily accessed via codamenu().

Usage

create.mark.mcmc(
  filename,
  ncovs,
  nmeans,
  ndesigns,
  nsigmas,
  nrhos,
  nlogit,
  include = F
)

Arguments

filename	name of file containing mcmc values
ncovs	number of covariates
nmeans	number of means
ndesigns	number of designs
nsigmas	number of sigmas
nrhos	number of rhos
nlogit	number of logits
include	if TRUE it includes ir/propJumps fields

Value

An mcmc object if one chain and an mcmc list if more than one chain. Each can be used with the coda package

Author(s)

Jeff Laake

RMark documentation built on Aug. 14, 2022, 1:05 a.m.