Description Usage Arguments Value Author(s) Examples
Given a RNA secondary structure,it compute bulge loops in the RNA secondary structure
1 | bulge_loop(ctFile)
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ctFile |
A RNA secondary structure file without the first line of free energy information |
Return a list containing base positions in bulge loops
Zheng Hewei
1 2 3 4 5 6 7 8 9 10 | ###Create a RNA secondary structure
col1 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
col2 <- c("G","C","C","A","C","C","C","U","G","C","A","G","G","G","U","C","G","G","C")
col3 <- c(0,1,2,3,4,5,6,7,8,0,10,11,12,13,14,15,16,17,18)
col4 <- c(2,3,4,5,6,7,8,9,0,11,12,13,14,15,16,17,18,19,0)
col5 <- c(19,18,17,15,14,13,12,11,10,9,8,7,6,5,4,0,3,2,1)
col6 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
data <- matrix(c(col1,col2,col3,col4,col5,col6),byrow=FALSE,ncol =6)
###Compute bulge loops in the RNA secondary structure
bulge_loop(data)
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