Description Usage Arguments Value See Also Examples
Applies the rankbased inverse normal transformation (rankNorm
)
to the phenotype y
. Conducts tests of association between the loci in
G
and transformed phenotype, adjusting for the model matrix X
.
1 2 
y 
Numeric phenotype vector. 
G 
Obs by snp genotype matrix. 
X 
Model matrix of covariates and structure adjustments. Should include an intercept. Omit to perform marginal tests of association. 
k 
Offset applied during ranknormalization. See

test 
Either Score or Wald. 
simple 
Return the pvalues only? 
parallel 
Logical indicating whether to run in parallel. Must register parallel backend first. 
If simple=T
, returns a vector of pvalues, one for each column
of G
. If simple=F
, returns a numeric matrix, including the
Wald or Score statistic, its standard error, the Zscore, and the pvalue.
Basic association test BAT
, indirect INT IINT
, omnibus INT OINT
.
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