RNifti: Fast R and C++ Access to NIfTI Images

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Provides very fast access to images stored in the NIfTI-1 file format <http://nifti.nimh.nih.gov/nifti-1>, with seamless synchronisation between compiled C and interpreted R code. Not to be confused with 'RNiftyReg', which provides tools for image registration.

Author
Jon Clayden [cre, aut], Bob Cox [aut], Mark Jenkinson [aut], Rick Reynolds [ctb], Kate Fissell [ctb], Jean-loup Gailly [cph], Mark Adler [cph]
Date of publication
2016-12-08 15:29:51
Maintainer
Jon Clayden <code@clayden.org>
License
GPL-2
Version
0.3.0
URLs

View on CRAN

Man pages

dumpNifti
Dump the contents of an internal NIfTI-1 object
internalImage
Internal images
ndim
Number of dimensions
pixdim
Pixel dimensions and units
readNifti
Read a NIfTI-1 format file
retrieveNifti
Obtain an internal NIfTI representation of an object
updateNifti
Update an internal NIfTI-1 object using a template
voxelToWorld
Transform points between voxel and "world" coordinates
writeNifti
Write a NIfTI-1 format file
xform
Obtain or replace the "xform" transforms for an image

Files in this package

RNifti
RNifti/inst
RNifti/inst/COPYRIGHTS
RNifti/inst/extdata
RNifti/inst/extdata/example.nii.gz
RNifti/inst/doxygen
RNifti/inst/doxygen/html
RNifti/inst/doxygen/html/tab_a.png
RNifti/inst/doxygen/html/nav_f.png
RNifti/inst/doxygen/html/index.html
RNifti/inst/doxygen/html/classes.html
RNifti/inst/doxygen/html/sync_on.png
RNifti/inst/doxygen/html/dir_2b5d1a398a9eec011391d543f21db223.html
RNifti/inst/doxygen/html/folderopen.png
RNifti/inst/doxygen/html/tab_b.png
RNifti/inst/doxygen/html/nav_h.png
RNifti/inst/doxygen/html/struct_r_nifti_1_1_nifti_image_1_1_block.html
RNifti/inst/doxygen/html/dynsections.js
RNifti/inst/doxygen/html/doc.png
RNifti/inst/doxygen/html/files.html
RNifti/inst/doxygen/html/class_nifti_image-members.html
RNifti/inst/doxygen/html/functions.html
RNifti/inst/doxygen/html/class_r_nifti_1_1_nifti_image.html
RNifti/inst/doxygen/html/search
RNifti/inst/doxygen/html/search/functions_2.html
RNifti/inst/doxygen/html/search/functions_0.js
RNifti/inst/doxygen/html/search/all_c.html
RNifti/inst/doxygen/html/search/functions_b.html
RNifti/inst/doxygen/html/search/searchdata.js
RNifti/inst/doxygen/html/search/classes_0.js
RNifti/inst/doxygen/html/search/all_1.html
RNifti/inst/doxygen/html/search/variables_2.js
RNifti/inst/doxygen/html/search/functions_7.html
RNifti/inst/doxygen/html/search/search.js
RNifti/inst/doxygen/html/search/functions_6.html
RNifti/inst/doxygen/html/search/all_5.js
RNifti/inst/doxygen/html/search/all_0.js
RNifti/inst/doxygen/html/search/classes_0.html
RNifti/inst/doxygen/html/search/functions_1.js
RNifti/inst/doxygen/html/search/all_2.js
RNifti/inst/doxygen/html/search/all_3.html
RNifti/inst/doxygen/html/search/all_7.html
RNifti/inst/doxygen/html/search/functions_a.js
RNifti/inst/doxygen/html/search/all_2.html
RNifti/inst/doxygen/html/search/all_e.html
RNifti/inst/doxygen/html/search/functions_3.html
RNifti/inst/doxygen/html/search/functions_c.html
RNifti/inst/doxygen/html/search/search_m.png
RNifti/inst/doxygen/html/search/functions_8.js
RNifti/inst/doxygen/html/search/nomatches.html
RNifti/inst/doxygen/html/search/all_1.js
RNifti/inst/doxygen/html/search/variables_1.html
RNifti/inst/doxygen/html/search/functions_3.js
RNifti/inst/doxygen/html/search/variables_2.html
RNifti/inst/doxygen/html/search/variables_0.html
RNifti/inst/doxygen/html/search/all_8.js
RNifti/inst/doxygen/html/search/pages_0.html
RNifti/inst/doxygen/html/search/all_4.js
RNifti/inst/doxygen/html/search/all_d.js
RNifti/inst/doxygen/html/search/variables_0.js
RNifti/inst/doxygen/html/search/all_a.html
RNifti/inst/doxygen/html/search/functions_8.html
RNifti/inst/doxygen/html/search/all_c.js
RNifti/inst/doxygen/html/search/functions_2.js
RNifti/inst/doxygen/html/search/functions_5.html
RNifti/inst/doxygen/html/search/functions_9.js
RNifti/inst/doxygen/html/search/functions_6.js
RNifti/inst/doxygen/html/search/all_8.html
RNifti/inst/doxygen/html/search/classes_1.js
RNifti/inst/doxygen/html/search/all_4.html
RNifti/inst/doxygen/html/search/variables_1.js
RNifti/inst/doxygen/html/search/all_0.html
RNifti/inst/doxygen/html/search/all_a.js
RNifti/inst/doxygen/html/search/all_6.html
RNifti/inst/doxygen/html/search/mag_sel.png
RNifti/inst/doxygen/html/search/all_b.js
RNifti/inst/doxygen/html/search/functions_4.js
RNifti/inst/doxygen/html/search/classes_1.html
RNifti/inst/doxygen/html/search/all_7.js
RNifti/inst/doxygen/html/search/functions_d.js
RNifti/inst/doxygen/html/search/all_5.html
RNifti/inst/doxygen/html/search/all_9.html
RNifti/inst/doxygen/html/search/functions_7.js
RNifti/inst/doxygen/html/search/all_9.js
RNifti/inst/doxygen/html/search/close.png
RNifti/inst/doxygen/html/search/search_l.png
RNifti/inst/doxygen/html/search/functions_b.js
RNifti/inst/doxygen/html/search/functions_0.html
RNifti/inst/doxygen/html/search/search_r.png
RNifti/inst/doxygen/html/search/functions_1.html
RNifti/inst/doxygen/html/search/search.css
RNifti/inst/doxygen/html/search/all_e.js
RNifti/inst/doxygen/html/search/functions_d.html
RNifti/inst/doxygen/html/search/functions_4.html
RNifti/inst/doxygen/html/search/functions_5.js
RNifti/inst/doxygen/html/search/all_3.js
RNifti/inst/doxygen/html/search/functions_a.html
RNifti/inst/doxygen/html/search/all_b.html
RNifti/inst/doxygen/html/search/functions_9.html
RNifti/inst/doxygen/html/search/pages_0.js
RNifti/inst/doxygen/html/search/all_6.js
RNifti/inst/doxygen/html/search/functions_c.js
RNifti/inst/doxygen/html/search/all_d.html
RNifti/inst/doxygen/html/menu.js
RNifti/inst/doxygen/html/annotated.html
RNifti/inst/doxygen/html/open.png
RNifti/inst/doxygen/html/functions_vars.html
RNifti/inst/doxygen/html/doxygen.css
RNifti/inst/doxygen/html/doxygen.png
RNifti/inst/doxygen/html/class_r_nifti_1_1_nifti_image-members.html
RNifti/inst/doxygen/html/tab_h.png
RNifti/inst/doxygen/html/splitbar.png
RNifti/inst/doxygen/html/functions_func.html
RNifti/inst/doxygen/html/struct_nifti_image_1_1_block-members.html
RNifti/inst/doxygen/html/jquery.js
RNifti/inst/doxygen/html/nav_g.png
RNifti/inst/doxygen/html/dir_920884c6b3b2f0be94e27d51660adee5.html
RNifti/inst/doxygen/html/struct_r_nifti_1_1_nifti_image_1_1_block-members.html
RNifti/inst/doxygen/html/tab_s.png
RNifti/inst/doxygen/html/dir_98a44f28b9ced65c076c4e168f5923c6.html
RNifti/inst/doxygen/html/closed.png
RNifti/inst/doxygen/html/_nifti_image_8h_source.html
RNifti/inst/doxygen/html/struct_nifti_image_1_1_block.html
RNifti/inst/doxygen/html/menudata.js
RNifti/inst/doxygen/html/bc_s.png
RNifti/inst/doxygen/html/folderclosed.png
RNifti/inst/doxygen/html/tabs.css
RNifti/inst/doxygen/html/class_nifti_image.html
RNifti/inst/doxygen/html/sync_off.png
RNifti/inst/doxygen/html/bdwn.png
RNifti/inst/include
RNifti/inst/include/lib
RNifti/inst/include/lib/print.h
RNifti/inst/include/lib/NiftiImage.h
RNifti/inst/include/zlib
RNifti/inst/include/zlib/zconf.h
RNifti/inst/include/zlib/zlib.h
RNifti/inst/include/znzlib
RNifti/inst/include/znzlib/znzlib.h
RNifti/inst/include/RNiftiAPI.h
RNifti/inst/include/RNifti.h
RNifti/inst/include/niftilib
RNifti/inst/include/niftilib/nifti1.h
RNifti/inst/include/niftilib/nifti1_io.h
RNifti/tests
RNifti/tests/testthat.R
RNifti/tests/testthat
RNifti/tests/testthat/test-05-nifti.R
RNifti/tests/testthat/test-10-xform.R
RNifti/src
RNifti/src/Makevars
RNifti/src/zlib
RNifti/src/zlib/adler32.c
RNifti/src/zlib/crc32.h
RNifti/src/zlib/inftrees.h
RNifti/src/zlib/gzread.c
RNifti/src/zlib/zutil.h
RNifti/src/zlib/inflate.h
RNifti/src/zlib/gzwrite.c
RNifti/src/zlib/inffast.c
RNifti/src/zlib/inflate.c
RNifti/src/zlib/zutil.c
RNifti/src/zlib/gzclose.c
RNifti/src/zlib/inftrees.c
RNifti/src/zlib/gzlib.c
RNifti/src/zlib/deflate.h
RNifti/src/zlib/compress.c
RNifti/src/zlib/gzguts.h
RNifti/src/zlib/uncompr.c
RNifti/src/zlib/deflate.c
RNifti/src/zlib/inffast.h
RNifti/src/zlib/crc32.c
RNifti/src/zlib/trees.h
RNifti/src/zlib/infback.c
RNifti/src/zlib/trees.c
RNifti/src/zlib/inffixed.h
RNifti/src/main.cpp
RNifti/src/znzlib
RNifti/src/znzlib/znzlib.c
RNifti/src/init.cpp
RNifti/src/niftilib
RNifti/src/niftilib/nifti1_io.c
RNifti/NAMESPACE
RNifti/NEWS
RNifti/R
RNifti/R/nifti.R
RNifti/R/image.R
RNifti/R/xform.R
RNifti/R/zzz.R
RNifti/README.md
RNifti/MD5
RNifti/DESCRIPTION
RNifti/man
RNifti/man/internalImage.Rd
RNifti/man/readNifti.Rd
RNifti/man/voxelToWorld.Rd
RNifti/man/pixdim.Rd
RNifti/man/updateNifti.Rd
RNifti/man/ndim.Rd
RNifti/man/xform.Rd
RNifti/man/retrieveNifti.Rd
RNifti/man/writeNifti.Rd
RNifti/man/dumpNifti.Rd
RNifti/cleanup
RNifti/cleanup.win