mycorrhizal_network | R Documentation |
Mycorrhizal intercation network between orchids and mycorrhizal fungi from La Réunion island (Martos et al., 2012) along with the reconstructed phylogenetic trees of the orchids and the fungal OTUs.
data(mycorrhizal_network)
These phylogenies were constructed by maximum likelihood inference from four plastid genes for the orchids and one nuclear gene for the fungi. See Martos et al. (2012) for details.
Martos, F., Munoz, F., Pailler, T., Kottke, I., Gonneau, C. & Selosse, M.-A. (2012). The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids. Mol. Ecol., 21, 5098–5109.
Martos, F., Munoz, F., Pailler, T., Kottke, I., Gonneau, C. & Selosse, M.-A. (2012). The role of epiphytism in architecture and evolutionary constraint within mycorrhizal networks of tropical orchids. Molecular Ecology, 21, 5098–5109.
Perez-Lamarque B, Maliet O, Pichon B, Selosse M-A, Martos F, Morlon H. 2022. Do closely related species interact with similar partners? Testing for phylogenetic signal in bipartite interaction networks. bioRxiv, 2021.08.30.458192, ver. 6 peer-reviewed and recommended by Peer Community in Evolutionary Biology. https://doi.org/10.1101/2021.08.30.458192
data(mycorrhizal_network) network <- mycorrhizal_network[[1]] # interaction matrix tree_orchids <- mycorrhizal_network[[2]] # phylogenetic tree (phylo object) tree_fungi <- mycorrhizal_network[[3]] # phylogenetic tree (phylo object)
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